Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is glpF.2 [H]
Identifier: 15675676
GI number: 15675676
Start: 1538514
End: 1539461
Strand: Reverse
Name: glpF.2 [H]
Synonym: SPy_1854
Alternate gene names: 15675676
Gene position: 1539461-1538514 (Counterclockwise)
Preceding gene: 15675677
Following gene: 15675674
Centisome position: 83.1
GC content: 38.08
Gene sequence:
>948_bases ATGATCATTTTATTTATTATTTTATTACCTTTACATTCATCAATAAGCCTGTTAAAATGGTATTTGTTATATTTTATTAT TTGGAGGAAACCAGAAAACATGGAAATGACATGGACTGTGAAATACATCACAGAATTTATCGCAACGGCTTTTTTGATTA TTTTGGGAAATGGAGCTGTTGCTAACGTCGACTTAAAAGGAACAAAAGGACATAACTCAGGTTGGTTAGTGATTGCTTTT GGCTATGGCTTAGGAGTTATGATGCCAGCTTTGATGTTTGGTAATGTATCTGGAAACCATATTAATCCTGCTTTCACAGT TGGACTAGCAGTATCAGGCTTGTTCCCATGGGCTCACGTCTTACAATACGTTGTGGCACAATTACTTGGAGCTATCTTTG GTCAGTTGGTAGTGGTAATGGTTTATAAACCTTACTTTATGAAAACTGAAAATCCAAATCATGTTTTAGGCTCATTCTCA ACGATTTCATCTCTTGATAATGGTCAAAAAGACAGTCATAAAGCCTCTTATATCAATGGTTTCTTAAACGAATTTGTAGG TTCATTTGTTCTTTTCTTTGGTGCTTTGGCTTTGACTAAAAACTACTTTGGGGTAGAGTTAGTTGGTAAATTGATTGAAG CAGGCTACGACCAAACAACTGCAGCAACACAAATTTCACCATACGTGACAGGCTCATTGGCGGTTGCTCACATTGGTATT GGTTTCTTAGTTATGGTCTTGGTTACTTCATTAGGTGGACCAACTGGGCCAGCACTAAACCCAGCGCGTGATTTTGGGCC TCGTTTGTTACACCACTTCTTACCAAAATCAGTTCTTGGTCAAGCCAAAGGTGATTCAAAATGGTGGTATGCATGGGTTC CTGTAGTTGCACCTATCTTAGCGGCGATAGTAGCCGTAGCAGCGTTTAAATACCTTTATATCAGATAA
Upstream 100 bases:
>100_bases AATAAAAAATGTTATAATACTATGAAATAAAGTGATAAAGATAAGGCCTTTTATGGTCCTTTTCTTTACCGCTTTTATTA TTGTGTGAAAATAACACTTA
Downstream 100 bases:
>100_bases AAAAAGAACTAAAGCTTCTTTTAGACTCAAGACAAGCTCGCTTAAGGAACTTGTCTTTTTTATATGAGTTAAGCGAAATC TAATACAAACTTGACTGTCT
Product: putative glycerol uptake facilitator protein
Products: glycerol [Cytoplasm] [C]
Alternate protein names: Aquaglyceroporin; Glyceroaquaporin [H]
Number of amino acids: Translated: 315; Mature: 315
Protein sequence:
>315_residues MIILFIILLPLHSSISLLKWYLLYFIIWRKPENMEMTWTVKYITEFIATAFLIILGNGAVANVDLKGTKGHNSGWLVIAF GYGLGVMMPALMFGNVSGNHINPAFTVGLAVSGLFPWAHVLQYVVAQLLGAIFGQLVVVMVYKPYFMKTENPNHVLGSFS TISSLDNGQKDSHKASYINGFLNEFVGSFVLFFGALALTKNYFGVELVGKLIEAGYDQTTAATQISPYVTGSLAVAHIGI GFLVMVLVTSLGGPTGPALNPARDFGPRLLHHFLPKSVLGQAKGDSKWWYAWVPVVAPILAAIVAVAAFKYLYIR
Sequences:
>Translated_315_residues MIILFIILLPLHSSISLLKWYLLYFIIWRKPENMEMTWTVKYITEFIATAFLIILGNGAVANVDLKGTKGHNSGWLVIAF GYGLGVMMPALMFGNVSGNHINPAFTVGLAVSGLFPWAHVLQYVVAQLLGAIFGQLVVVMVYKPYFMKTENPNHVLGSFS TISSLDNGQKDSHKASYINGFLNEFVGSFVLFFGALALTKNYFGVELVGKLIEAGYDQTTAATQISPYVTGSLAVAHIGI GFLVMVLVTSLGGPTGPALNPARDFGPRLLHHFLPKSVLGQAKGDSKWWYAWVPVVAPILAAIVAVAAFKYLYIR >Mature_315_residues MIILFIILLPLHSSISLLKWYLLYFIIWRKPENMEMTWTVKYITEFIATAFLIILGNGAVANVDLKGTKGHNSGWLVIAF GYGLGVMMPALMFGNVSGNHINPAFTVGLAVSGLFPWAHVLQYVVAQLLGAIFGQLVVVMVYKPYFMKTENPNHVLGSFS TISSLDNGQKDSHKASYINGFLNEFVGSFVLFFGALALTKNYFGVELVGKLIEAGYDQTTAATQISPYVTGSLAVAHIGI GFLVMVLVTSLGGPTGPALNPARDFGPRLLHHFLPKSVLGQAKGDSKWWYAWVPVVAPILAAIVAVAAFKYLYIR
Specific function: Mixed channel protein that transports both water and glycerol [H]
COG id: COG0580
COG function: function code G; Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MIP/aquaporin (TC 1.A.8) family [H]
Homologues:
Organism=Homo sapiens, GI4826645, Length=298, Percent_Identity=30.2013422818792, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI22538420, Length=279, Percent_Identity=30.4659498207885, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI157266307, Length=280, Percent_Identity=27.8571428571429, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI4502187, Length=280, Percent_Identity=28.2142857142857, Blast_Score=80, Evalue=4e-15, Organism=Escherichia coli, GI1790362, Length=288, Percent_Identity=30.5555555555556, Blast_Score=86, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17558372, Length=284, Percent_Identity=27.112676056338, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71994009, Length=271, Percent_Identity=26.5682656826568, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71992966, Length=277, Percent_Identity=27.0758122743682, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17544068, Length=271, Percent_Identity=24.7232472324723, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17531431, Length=279, Percent_Identity=26.8817204301075, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17531429, Length=279, Percent_Identity=26.8817204301075, Blast_Score=73, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6321054, Length=229, Percent_Identity=31.8777292576419, Blast_Score=87, Evalue=4e-18, Organism=Drosophila melanogaster, GI45550503, Length=275, Percent_Identity=26.5454545454545, Blast_Score=65, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000425 - InterPro: IPR022357 [H]
Pfam domain/function: PF00230 MIP [H]
EC number: NA
Molecular weight: Translated: 34394; Mature: 34394
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: PS00221 MIP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIILFIILLPLHSSISLLKWYLLYFIIWRKPENMEMTWTVKYITEFIATAFLIILGNGAV CHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCE ANVDLKGTKGHNSGWLVIAFGYGLGVMMPALMFGNVSGNHINPAFTVGLAVSGLFPWAHV EEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHHH LQYVVAQLLGAIFGQLVVVMVYKPYFMKTENPNHVLGSFSTISSLDNGQKDSHKASYING HHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHCCHHHHHHHCCCCCCHHHHHHHHH FLNEFVGSFVLFFGALALTKNYFGVELVGKLIEAGYDQTTAATQISPYVTGSLAVAHIGI HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHH GFLVMVLVTSLGGPTGPALNPARDFGPRLLHHFLPKSVLGQAKGDSKWWYAWVPVVAPIL HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEHHHHHHHHH AAIVAVAAFKYLYIR HHHHHHHHHHHHHCC >Mature Secondary Structure MIILFIILLPLHSSISLLKWYLLYFIIWRKPENMEMTWTVKYITEFIATAFLIILGNGAV CHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCE ANVDLKGTKGHNSGWLVIAFGYGLGVMMPALMFGNVSGNHINPAFTVGLAVSGLFPWAHV EEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHHH LQYVVAQLLGAIFGQLVVVMVYKPYFMKTENPNHVLGSFSTISSLDNGQKDSHKASYING HHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHCCHHHHHHHCCCCCCHHHHHHHHH FLNEFVGSFVLFFGALALTKNYFGVELVGKLIEAGYDQTTAATQISPYVTGSLAVAHIGI HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHH GFLVMVLVTSLGGPTGPALNPARDFGPRLLHHFLPKSVLGQAKGDSKWWYAWVPVVAPIL HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEHHHHHHHHH AAIVAVAAFKYLYIR HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: glycerol [Periplasm] [C]
Specific reaction: glycerol [Periplasm] = glycerol [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11337471 [H]