Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is patM [H]
Identifier: 15675528
GI number: 15675528
Start: 1377397
End: 1378200
Strand: Reverse
Name: patM [H]
Synonym: SPy_1658
Alternate gene names: 15675528
Gene position: 1378200-1377397 (Counterclockwise)
Preceding gene: 15675529
Following gene: 15675527
Centisome position: 74.4
GC content: 39.43
Gene sequence:
>804_bases ATGACATCAGTGTTTTTAACCAGTGGTTGGGCTTTTTATGATTACCTCATCTCACCGATTCCACATGGGAAACTTTTTAG TTGGCATGCTGTTTTTGATGCCATTCCAAATATTATCCAACGGCTTCCAATTACGCTTGGTTTGACACTATCAGGAGCAA CCTTTGGCTTGGTTTTGGCTTTGATTTTTGCCCTTGTCAAAATTAATAAAGTGAAGCTACTATACCCTATTCAAGCTATT TTTGTGAGTTTCTTGCGAGGAACTCCTATTTTGGTACAGTTGATGTTGACCTACTACGGTATTCCCCTCTTTCTAAAATT TCTCAATCAGAAGTATGGCTTTGATTGGAATGTTAATGCAATTCCGGCTTCTATTTTTGCCATTACAGCCTTTGCTTTTA ATGAAGCAGCCTACGCTAGTGAAACTATTCGGGCAGCCATTTTATCAGTAGATACAGGTGAAATTGAAGCAGCAAAAAGT CTAGGCATGACTTCTGTGCAGGTTTACCGTCGTGTCATTATTCCTAATGCAACTGTTGTGGCTATTCCAACCTTGATTAA TGGGTTAATTGGCTTAACTAAAGGAACATCGCTTGCCTTTAATGCAGGGATTGTCGAAATGTTTGCCCAGGCTCAAATTC TAGGCGGATCAGATTACCGTTATTTTGAACGTTATATCTCTGTTGCTCTTGTCTATTGGTCTATCAGTATTTTGATGGAG CAAGTAGGTCGCTTGATTGAAAACAAGATGGCCATCAAAGCACCAGAACAAGCTAGAAATGAAAAGTTAGGAGAATTGCG TTGA
Upstream 100 bases:
>100_bases ATCATAGCTTTTGCTTATTGCTATAATACGAATTTACTATTTTACATGTGGGTCTAAGAGTGTTAGAATATTAAGACAAA CAAATACAAAGGGGAAATAC
Downstream 100 bases:
>100_bases TGATTACAATTAGAAATTTGAGCAAGACATTCTCAGGGCAAAAAGTTTTAGATAGTTTGGCTCTTGATATTGAAAAAGGT CAAGTGATTGCTTTAGTTGG
Product: putative amino acid ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 267; Mature: 266
Protein sequence:
>267_residues MTSVFLTSGWAFYDYLISPIPHGKLFSWHAVFDAIPNIIQRLPITLGLTLSGATFGLVLALIFALVKINKVKLLYPIQAI FVSFLRGTPILVQLMLTYYGIPLFLKFLNQKYGFDWNVNAIPASIFAITAFAFNEAAYASETIRAAILSVDTGEIEAAKS LGMTSVQVYRRVIIPNATVVAIPTLINGLIGLTKGTSLAFNAGIVEMFAQAQILGGSDYRYFERYISVALVYWSISILME QVGRLIENKMAIKAPEQARNEKLGELR
Sequences:
>Translated_267_residues MTSVFLTSGWAFYDYLISPIPHGKLFSWHAVFDAIPNIIQRLPITLGLTLSGATFGLVLALIFALVKINKVKLLYPIQAI FVSFLRGTPILVQLMLTYYGIPLFLKFLNQKYGFDWNVNAIPASIFAITAFAFNEAAYASETIRAAILSVDTGEIEAAKS LGMTSVQVYRRVIIPNATVVAIPTLINGLIGLTKGTSLAFNAGIVEMFAQAQILGGSDYRYFERYISVALVYWSISILME QVGRLIENKMAIKAPEQARNEKLGELR >Mature_266_residues TSVFLTSGWAFYDYLISPIPHGKLFSWHAVFDAIPNIIQRLPITLGLTLSGATFGLVLALIFALVKINKVKLLYPIQAIF VSFLRGTPILVQLMLTYYGIPLFLKFLNQKYGFDWNVNAIPASIFAITAFAFNEAAYASETIRAAILSVDTGEIEAAKSL GMTSVQVYRRVIIPNATVVAIPTLINGLIGLTKGTSLAFNAGIVEMFAQAQILGGSDYRYFERYISVALVYWSISILMEQ VGRLIENKMAIKAPEQARNEKLGELR
Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0765
COG function: function code E; ABC-type amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1788226, Length=232, Percent_Identity=35.7758620689655, Blast_Score=146, Evalue=1e-36, Organism=Escherichia coli, GI1787030, Length=227, Percent_Identity=29.9559471365639, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1788645, Length=212, Percent_Identity=31.1320754716981, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1787086, Length=219, Percent_Identity=27.8538812785388, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786873, Length=217, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786874, Length=213, Percent_Identity=27.6995305164319, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1788646, Length=215, Percent_Identity=27.4418604651163, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI87082239, Length=229, Percent_Identity=27.9475982532751, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787087, Length=215, Percent_Identity=25.1162790697674, Blast_Score=74, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 29527; Mature: 29396
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSVFLTSGWAFYDYLISPIPHGKLFSWHAVFDAIPNIIQRLPITLGLTLSGATFGLVLA CCEEEEECCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHCCHHEEEEECCHHHHHHHH LIFALVKINKVKLLYPIQAIFVSFLRGTPILVQLMLTYYGIPLFLKFLNQKYGFDWNVNA HHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH IPASIFAITAFAFNEAAYASETIRAAILSVDTGEIEAAKSLGMTSVQVYRRVIIPNATVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEE AIPTLINGLIGLTKGTSLAFNAGIVEMFAQAQILGGSDYRYFERYISVALVYWSISILME EHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH QVGRLIENKMAIKAPEQARNEKLGELR HHHHHHHHHHHCCCCHHHHHCCCCCCC >Mature Secondary Structure TSVFLTSGWAFYDYLISPIPHGKLFSWHAVFDAIPNIIQRLPITLGLTLSGATFGLVLA CEEEEECCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHCCHHEEEEECCHHHHHHHH LIFALVKINKVKLLYPIQAIFVSFLRGTPILVQLMLTYYGIPLFLKFLNQKYGFDWNVNA HHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH IPASIFAITAFAFNEAAYASETIRAAILSVDTGEIEAAKSLGMTSVQVYRRVIIPNATVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEE AIPTLINGLIGLTKGTSLAFNAGIVEMFAQAQILGGSDYRYFERYISVALVYWSISILME EHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH QVGRLIENKMAIKAPEQARNEKLGELR HHHHHHHHHHHCCCCHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA