Definition Streptococcus pyogenes M1 GAS chromosome, complete genome.
Accession NC_002737
Length 1,852,441

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The map label for this gene is patM [H]

Identifier: 15675528

GI number: 15675528

Start: 1377397

End: 1378200

Strand: Reverse

Name: patM [H]

Synonym: SPy_1658

Alternate gene names: 15675528

Gene position: 1378200-1377397 (Counterclockwise)

Preceding gene: 15675529

Following gene: 15675527

Centisome position: 74.4

GC content: 39.43

Gene sequence:

>804_bases
ATGACATCAGTGTTTTTAACCAGTGGTTGGGCTTTTTATGATTACCTCATCTCACCGATTCCACATGGGAAACTTTTTAG
TTGGCATGCTGTTTTTGATGCCATTCCAAATATTATCCAACGGCTTCCAATTACGCTTGGTTTGACACTATCAGGAGCAA
CCTTTGGCTTGGTTTTGGCTTTGATTTTTGCCCTTGTCAAAATTAATAAAGTGAAGCTACTATACCCTATTCAAGCTATT
TTTGTGAGTTTCTTGCGAGGAACTCCTATTTTGGTACAGTTGATGTTGACCTACTACGGTATTCCCCTCTTTCTAAAATT
TCTCAATCAGAAGTATGGCTTTGATTGGAATGTTAATGCAATTCCGGCTTCTATTTTTGCCATTACAGCCTTTGCTTTTA
ATGAAGCAGCCTACGCTAGTGAAACTATTCGGGCAGCCATTTTATCAGTAGATACAGGTGAAATTGAAGCAGCAAAAAGT
CTAGGCATGACTTCTGTGCAGGTTTACCGTCGTGTCATTATTCCTAATGCAACTGTTGTGGCTATTCCAACCTTGATTAA
TGGGTTAATTGGCTTAACTAAAGGAACATCGCTTGCCTTTAATGCAGGGATTGTCGAAATGTTTGCCCAGGCTCAAATTC
TAGGCGGATCAGATTACCGTTATTTTGAACGTTATATCTCTGTTGCTCTTGTCTATTGGTCTATCAGTATTTTGATGGAG
CAAGTAGGTCGCTTGATTGAAAACAAGATGGCCATCAAAGCACCAGAACAAGCTAGAAATGAAAAGTTAGGAGAATTGCG
TTGA

Upstream 100 bases:

>100_bases
ATCATAGCTTTTGCTTATTGCTATAATACGAATTTACTATTTTACATGTGGGTCTAAGAGTGTTAGAATATTAAGACAAA
CAAATACAAAGGGGAAATAC

Downstream 100 bases:

>100_bases
TGATTACAATTAGAAATTTGAGCAAGACATTCTCAGGGCAAAAAGTTTTAGATAGTTTGGCTCTTGATATTGAAAAAGGT
CAAGTGATTGCTTTAGTTGG

Product: putative amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MTSVFLTSGWAFYDYLISPIPHGKLFSWHAVFDAIPNIIQRLPITLGLTLSGATFGLVLALIFALVKINKVKLLYPIQAI
FVSFLRGTPILVQLMLTYYGIPLFLKFLNQKYGFDWNVNAIPASIFAITAFAFNEAAYASETIRAAILSVDTGEIEAAKS
LGMTSVQVYRRVIIPNATVVAIPTLINGLIGLTKGTSLAFNAGIVEMFAQAQILGGSDYRYFERYISVALVYWSISILME
QVGRLIENKMAIKAPEQARNEKLGELR

Sequences:

>Translated_267_residues
MTSVFLTSGWAFYDYLISPIPHGKLFSWHAVFDAIPNIIQRLPITLGLTLSGATFGLVLALIFALVKINKVKLLYPIQAI
FVSFLRGTPILVQLMLTYYGIPLFLKFLNQKYGFDWNVNAIPASIFAITAFAFNEAAYASETIRAAILSVDTGEIEAAKS
LGMTSVQVYRRVIIPNATVVAIPTLINGLIGLTKGTSLAFNAGIVEMFAQAQILGGSDYRYFERYISVALVYWSISILME
QVGRLIENKMAIKAPEQARNEKLGELR
>Mature_266_residues
TSVFLTSGWAFYDYLISPIPHGKLFSWHAVFDAIPNIIQRLPITLGLTLSGATFGLVLALIFALVKINKVKLLYPIQAIF
VSFLRGTPILVQLMLTYYGIPLFLKFLNQKYGFDWNVNAIPASIFAITAFAFNEAAYASETIRAAILSVDTGEIEAAKSL
GMTSVQVYRRVIIPNATVVAIPTLINGLIGLTKGTSLAFNAGIVEMFAQAQILGGSDYRYFERYISVALVYWSISILMEQ
VGRLIENKMAIKAPEQARNEKLGELR

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=232, Percent_Identity=35.7758620689655, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1787030, Length=227, Percent_Identity=29.9559471365639, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788645, Length=212, Percent_Identity=31.1320754716981, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787086, Length=219, Percent_Identity=27.8538812785388, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786873, Length=217, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786874, Length=213, Percent_Identity=27.6995305164319, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1788646, Length=215, Percent_Identity=27.4418604651163, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082239, Length=229, Percent_Identity=27.9475982532751, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787087, Length=215, Percent_Identity=25.1162790697674, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29527; Mature: 29396

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSVFLTSGWAFYDYLISPIPHGKLFSWHAVFDAIPNIIQRLPITLGLTLSGATFGLVLA
CCEEEEECCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHCCHHEEEEECCHHHHHHHH
LIFALVKINKVKLLYPIQAIFVSFLRGTPILVQLMLTYYGIPLFLKFLNQKYGFDWNVNA
HHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
IPASIFAITAFAFNEAAYASETIRAAILSVDTGEIEAAKSLGMTSVQVYRRVIIPNATVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEE
AIPTLINGLIGLTKGTSLAFNAGIVEMFAQAQILGGSDYRYFERYISVALVYWSISILME
EHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
QVGRLIENKMAIKAPEQARNEKLGELR
HHHHHHHHHHHCCCCHHHHHCCCCCCC
>Mature Secondary Structure 
TSVFLTSGWAFYDYLISPIPHGKLFSWHAVFDAIPNIIQRLPITLGLTLSGATFGLVLA
CEEEEECCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHCCHHEEEEECCHHHHHHHH
LIFALVKINKVKLLYPIQAIFVSFLRGTPILVQLMLTYYGIPLFLKFLNQKYGFDWNVNA
HHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
IPASIFAITAFAFNEAAYASETIRAAILSVDTGEIEAAKSLGMTSVQVYRRVIIPNATVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEE
AIPTLINGLIGLTKGTSLAFNAGIVEMFAQAQILGGSDYRYFERYISVALVYWSISILME
EHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
QVGRLIENKMAIKAPEQARNEKLGELR
HHHHHHHHHHHCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA