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The map label for this gene is yhbH [C]

Identifier: 15675492

GI number: 15675492

Start: 1337070

End: 1337618

Strand: Reverse

Name: yhbH [C]

Synonym: SPy_1613

Alternate gene names: 15675492

Gene position: 1337618-1337070 (Counterclockwise)

Preceding gene: 15675493

Following gene: 15675488

Centisome position: 72.21

GC content: 35.52

Gene sequence:

>549_bases
ATGATTAAGTTCAGTATTCGTGGAGAAAATATCGAAGTGACAGAAGCTATTCGCGATTATGTAGAATCAAAGCTTACTAA
AATCGAAAAATATTTTGCTAAAGACCAAGAAATAGATGCACGTGTTAATTTAAAAGTTTATCGGGAGAGATCTTCAAAAG
TTGAGGTAACGATCCCATTAGATTCAGTAACCCTTCGTGCTGAAGATGTTTCACAGGATATGTACGGCTCTATTGATTTA
GTTGTTGATAAGATCGAACGCCAAATTAGAAAAAATAAAACCAAAATTGCTAAAAAACATCGCGAAAAGGTTCCAACTGG
TCAAGTCTTTACAACTGAGTTTGAAGCTGAAGAAGTCGATGAGATACCAGAAGTACAAGTTGTACGTACTAAAAATGTGA
CATTAAAACCAATGGATGTTGAAGAAGCGCGTTTACAGATGGAACTATTGGGACATGATTTCTTTATCTACACTGATTCT
GAAGATGGCGCAACAAACATTTTATACCGTCGCGAAGATGGAAACCTAGGATTAATAGAAGCTAAATAG

Upstream 100 bases:

>100_bases
AGTTTGTCAATTGCACGTTAAAACTTGCAAATTTTCATGAAAGCAGTATAATAGTATTAAAGATAAAGTAAGCGCTTCAA
GCGCGAGAAAGAGGTATCCT

Downstream 100 bases:

>100_bases
TTCACAACTAAAACCTACAGGGATGATTATACGTATTTTAAAAGTGGGAAAAAGCTATTCATGTTTAGAGGTGACATGAT
GAAAATGAGATTAAGTGATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MIKFSIRGENIEVTEAIRDYVESKLTKIEKYFAKDQEIDARVNLKVYRERSSKVEVTIPLDSVTLRAEDVSQDMYGSIDL
VVDKIERQIRKNKTKIAKKHREKVPTGQVFTTEFEAEEVDEIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDS
EDGATNILYRREDGNLGLIEAK

Sequences:

>Translated_182_residues
MIKFSIRGENIEVTEAIRDYVESKLTKIEKYFAKDQEIDARVNLKVYRERSSKVEVTIPLDSVTLRAEDVSQDMYGSIDL
VVDKIERQIRKNKTKIAKKHREKVPTGQVFTTEFEAEEVDEIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDS
EDGATNILYRREDGNLGLIEAK
>Mature_182_residues
MIKFSIRGENIEVTEAIRDYVESKLTKIEKYFAKDQEIDARVNLKVYRERSSKVEVTIPLDSVTLRAEDVSQDMYGSIDL
VVDKIERQIRKNKTKIAKKHREKVPTGQVFTTEFEAEEVDEIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDS
EDGATNILYRREDGNLGLIEAK

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family

Homologues:

Organism=Escherichia coli, GI1789595, Length=99, Percent_Identity=35.3535353535354, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RAFY_STRP6 (Q5XAQ7)

Other databases:

- EMBL:   CP000003
- RefSeq:   YP_060689.1
- PDB:   3LYV
- PDBsum:   3LYV
- ProteinModelPortal:   Q5XAQ7
- SMR:   Q5XAQ7
- EnsemblBacteria:   EBSTRT00000038158
- GeneID:   2940829
- GenomeReviews:   CP000003_GR
- KEGG:   spa:M6_Spy1371
- GeneTree:   EBGT00050000027117
- HOGENOM:   HBG675832
- OMA:   NVVYKRK
- ProtClustDB:   CLSK877230
- BioCyc:   SPYO286636:M6_SPY1371-MONOMER
- GO:   GO:0005488
- InterPro:   IPR003489
- Gene3D:   G3DSA:3.30.160.100
- TIGRFAMs:   TIGR00741

Pfam domain/function: PF02482 Ribosomal_S30AE; SSF69754 Ribosomal_S30Ae/sigma54_mod

EC number: NA

Molecular weight: Translated: 21100; Mature: 21100

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKFSIRGENIEVTEAIRDYVESKLTKIEKYFAKDQEIDARVNLKVYRERSSKVEVTIPL
CEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEEEEC
DSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHREKVPTGQVFTTEFEAEEVD
CCEEEEHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHH
EIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLGLIE
CCCCEEEEEECCCEECCCCHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEECCCCEEEEE
AK
EC
>Mature Secondary Structure
MIKFSIRGENIEVTEAIRDYVESKLTKIEKYFAKDQEIDARVNLKVYRERSSKVEVTIPL
CEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEEEEC
DSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHREKVPTGQVFTTEFEAEEVD
CCEEEEHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHH
EIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLGLIE
CCCCEEEEEECCCEECCCCHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEECCCCEEEEE
AK
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA