Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is ylmE [H]
Identifier: 15675419
GI number: 15675419
Start: 1247719
End: 1248390
Strand: Reverse
Name: ylmE [H]
Synonym: SPy_1519
Alternate gene names: 15675419
Gene position: 1248390-1247719 (Counterclockwise)
Preceding gene: 15675420
Following gene: 15675418
Centisome position: 67.39
GC content: 33.93
Gene sequence:
>672_bases ATGGATTTACTGACAAATAAAAAGAAAATTTTTGAGACTATCCGCTTATCTACAGAGGCAGCAAATAGGACTAATGATAG TGTTTCAGTTATTGCTGTAACAAAATATGTGGATAGTACAATTGCAGGTCAGCTTATCGAAGCAGGAATTGAGCACATTG CCGAAAACCGTGTTGATAAATTTCTTGAAAAGTATGATGCGTTAAAGTATATGCCAGTAAAGTGGCATTTAATTGGTACC TTACAACGTCGTAAAGTCAAGGAAGTTATCAATTATGTTGATTATTTTCACGCTCTAGATTCTGTGAGATTAGCTTTGGA AATCAACAAGAGAGCTGACCATCCTGTGAAGTGTTTTCTACAAGTTAATATTTCTAAAGAAGAGAGTAAACATGGTTTTA ACATTTCTGAGATTGATGAAGCGATTGGAGAAATAGGTAAGATGGAGAAGATACAGTTAGTTGGTTTAATGACTATGGCA CCAGCAAATGCCAGTAAAGAAAGTATTATAACTATTTTTCGACAAGCAAATCAATTAAGAAAAAACTTGCAGTTAAAAAA AAGAAAGAATATGCCTTTTACAGAATTGAGCATGGGCATGAGTAACGATTATCCAATTGCTATTCAAGAAGGCTCAACTT TTATTCGGATTGGTAGAGCTTTCTTTCACTAA
Upstream 100 bases:
>100_bases AAGGTGAATTGGATAACCATCTTAATATGTCAACGTTCTCAGCTAACGATGACAGTGATGATGAATTAGAAACGCCTCCA TTCTTTAAAAACCGTTAATA
Downstream 100 bases:
>100_bases TGGAGAATAAGATGGCTTTTAAAGATACATTTAACAAGATGATTTCTTATTTTGACACGGATGAGGTTAACGAAGTTGAA GAAGATGTTGCAGCATCAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 223; Mature: 223
Protein sequence:
>223_residues MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDKFLEKYDALKYMPVKWHLIGT LQRRKVKEVINYVDYFHALDSVRLALEINKRADHPVKCFLQVNISKEESKHGFNISEIDEAIGEIGKMEKIQLVGLMTMA PANASKESIITIFRQANQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFFH
Sequences:
>Translated_223_residues MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDKFLEKYDALKYMPVKWHLIGT LQRRKVKEVINYVDYFHALDSVRLALEINKRADHPVKCFLQVNISKEESKHGFNISEIDEAIGEIGKMEKIQLVGLMTMA PANASKESIITIFRQANQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFFH >Mature_223_residues MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDKFLEKYDALKYMPVKWHLIGT LQRRKVKEVINYVDYFHALDSVRLALEINKRADHPVKCFLQVNISKEESKHGFNISEIDEAIGEIGKMEKIQLVGLMTMA PANASKESIITIFRQANQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFFH
Specific function: Unknown
COG id: COG0325
COG function: function code R; Predicted enzyme with a TIM-barrel fold
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0001 family [H]
Homologues:
Organism=Homo sapiens, GI6005842, Length=230, Percent_Identity=33.9130434782609, Blast_Score=90, Evalue=2e-18, Organism=Escherichia coli, GI1789321, Length=227, Percent_Identity=29.9559471365639, Blast_Score=114, Evalue=6e-27, Organism=Caenorhabditis elegans, GI17533025, Length=236, Percent_Identity=28.3898305084746, Blast_Score=77, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6319435, Length=234, Percent_Identity=31.1965811965812, Blast_Score=80, Evalue=3e-16, Organism=Drosophila melanogaster, GI45550861, Length=212, Percent_Identity=25.4716981132075, Blast_Score=68, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001608 - InterPro: IPR011078 [H]
Pfam domain/function: PF01168 Ala_racemase_N [H]
EC number: NA
Molecular weight: Translated: 25488; Mature: 25488
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDK CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH FLEKYDALKYMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVRLALEINKRADHPVKCFL HHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEE QVNISKEESKHGFNISEIDEAIGEIGKMEKIQLVGLMTMAPANASKESIITIFRQANQLR EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHHHHH KNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFFH HHHHHHHHCCCCHHHHHCCCCCCCCEEEECCCEEEEHHHHHCC >Mature Secondary Structure MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDK CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH FLEKYDALKYMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVRLALEINKRADHPVKCFL HHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEE QVNISKEESKHGFNISEIDEAIGEIGKMEKIQLVGLMTMAPANASKESIITIFRQANQLR EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHHHHH KNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFFH HHHHHHHHCCCCHHHHHCCCCCCCCEEEECCCEEEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]