Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is hlyA1 [H]
Identifier: 15675401
GI number: 15675401
Start: 1228731
End: 1229558
Strand: Reverse
Name: hlyA1 [H]
Synonym: SPy_1497
Alternate gene names: 15675401
Gene position: 1229558-1228731 (Counterclockwise)
Preceding gene: 15675402
Following gene: 15675400
Centisome position: 66.38
GC content: 42.27
Gene sequence:
>828_bases ATGCCTAAAGAAAGAGTAGATGTGTTAGCCTATAAGCAAGGATTATTTGAGACCAGAGAGCAAGCTAAGCGTGGTGTCAT GGCAGGCTTAGTGGTCTCTGTGATTAATGGCCAACGCTATGACAAGCCAGGTGACAAAATTGACGATGGGACTGAGTTAA AACTTAAAGGTGAAAAACTCAAATACGTCAGTCGTGGTGGATTAAAACTGGAAAAGGGGCTGCACGTTTTTGGTGTATCA GTTGCTAATCAAATTGGGATTGATATTGGCGCTTCAACAGGTGGTTTTACCGATGTTATGTTACAAGATGGGGCCAAACT AGTCTATGCCGTCGACGTTGGGACTAACCAGTTGGTATGGAAACTCAGACAAGATCCACGAGTAAGAAGTATGGAACAGT ATAACTTTCGTTATGCTCAGCCAGAAGACTTTAATGAGGGACAGCCTGTATTTGCCAGTATTGATGTGTCCTTTATTTCT CTCAGCTTGATTTTGCCAGCCCTGCATAACGTTTTGTCAGATCAGGGACAGGTTATTGCTCTCATTAAACCGCAATTTGA AGCTGGGCGCGAGCAGATTGGTAAAAAAGGCATCGTCAAGGACAAACAGATTCATGAAAAAGTGATTCAAAAGGTCATGG ATTTTGCCTCAGGTTACGGATTTACAGTTAAGGGACTTGATTTTTCTCCTATTCAGGGTGGTCATGGCAATATCGAATTT TTAGCTCATCTTGCTAAGTCACAGACACCTGAAACGTTAGCCCCGCATTTGATTCAGAAAGTTGTTGCCAAGGCACATAA GGAGTTTGAGAAACATGAAAAAGAGTGA
Upstream 100 bases:
>100_bases GAGAGTTTAGATCAGGCTTTGACGATTTTTCAGACACTAGAAAGCGATGTAGGCTTTAAGCCTCAAATAATTACAAAACT GATAGAAGGGTTACGACTTA
Downstream 100 bases:
>100_bases ACGACTTGAATTAATCAAAAAAATGGTTTTGACGCATCCAATTGAGACGCAACATGACCTCTTAAGATTATTGGCAGAGC ATGGGTTAGAATTAACCCAG
Product: putative hemolysin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 275; Mature: 274
Protein sequence:
>275_residues MPKERVDVLAYKQGLFETREQAKRGVMAGLVVSVINGQRYDKPGDKIDDGTELKLKGEKLKYVSRGGLKLEKGLHVFGVS VANQIGIDIGASTGGFTDVMLQDGAKLVYAVDVGTNQLVWKLRQDPRVRSMEQYNFRYAQPEDFNEGQPVFASIDVSFIS LSLILPALHNVLSDQGQVIALIKPQFEAGREQIGKKGIVKDKQIHEKVIQKVMDFASGYGFTVKGLDFSPIQGGHGNIEF LAHLAKSQTPETLAPHLIQKVVAKAHKEFEKHEKE
Sequences:
>Translated_275_residues MPKERVDVLAYKQGLFETREQAKRGVMAGLVVSVINGQRYDKPGDKIDDGTELKLKGEKLKYVSRGGLKLEKGLHVFGVS VANQIGIDIGASTGGFTDVMLQDGAKLVYAVDVGTNQLVWKLRQDPRVRSMEQYNFRYAQPEDFNEGQPVFASIDVSFIS LSLILPALHNVLSDQGQVIALIKPQFEAGREQIGKKGIVKDKQIHEKVIQKVMDFASGYGFTVKGLDFSPIQGGHGNIEF LAHLAKSQTPETLAPHLIQKVVAKAHKEFEKHEKE >Mature_274_residues PKERVDVLAYKQGLFETREQAKRGVMAGLVVSVINGQRYDKPGDKIDDGTELKLKGEKLKYVSRGGLKLEKGLHVFGVSV ANQIGIDIGASTGGFTDVMLQDGAKLVYAVDVGTNQLVWKLRQDPRVRSMEQYNFRYAQPEDFNEGQPVFASIDVSFISL SLILPALHNVLSDQGQVIALIKPQFEAGREQIGKKGIVKDKQIHEKVIQKVMDFASGYGFTVKGLDFSPIQGGHGNIEFL AHLAKSQTPETLAPHLIQKVVAKAHKEFEKHEKE
Specific function: Unknown
COG id: COG1189
COG function: function code J; Predicted rRNA methylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S4 RNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004538 - InterPro: IPR002877 - InterPro: IPR002942 [H]
Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]
EC number: NA
Molecular weight: Translated: 30440; Mature: 30309
Theoretical pI: Translated: 9.39; Mature: 9.39
Prosite motif: PS50889 S4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKERVDVLAYKQGLFETREQAKRGVMAGLVVSVINGQRYDKPGDKIDDGTELKLKGEKL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCHH KYVSRGGLKLEKGLHVFGVSVANQIGIDIGASTGGFTDVMLQDGAKLVYAVDVGTNQLVW HHHHCCCEEECCCCEEEEEHHHHHHCCEECCCCCCHHHHEECCCCEEEEEEECCCCHHHH KLRQDPRVRSMEQYNFRYAQPEDFNEGQPVFASIDVSFISLSLILPALHNVLSDQGQVIA EECCCCCHHHHHHCCCEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEE LIKPQFEAGREQIGKKGIVKDKQIHEKVIQKVMDFASGYGFTVKGLDFSPIQGGHGNIEF EECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHH LAHLAKSQTPETLAPHLIQKVVAKAHKEFEKHEKE HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PKERVDVLAYKQGLFETREQAKRGVMAGLVVSVINGQRYDKPGDKIDDGTELKLKGEKL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCHH KYVSRGGLKLEKGLHVFGVSVANQIGIDIGASTGGFTDVMLQDGAKLVYAVDVGTNQLVW HHHHCCCEEECCCCEEEEEHHHHHHCCEECCCCCCHHHHEECCCCEEEEEEECCCCHHHH KLRQDPRVRSMEQYNFRYAQPEDFNEGQPVFASIDVSFISLSLILPALHNVLSDQGQVIA EECCCCCHHHHHHCCCEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEE LIKPQFEAGREQIGKKGIVKDKQIHEKVIQKVMDFASGYGFTVKGLDFSPIQGGHGNIEF EECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHH LAHLAKSQTPETLAPHLIQKVVAKAHKEFEKHEKE HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377; 2507400 [H]