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The map label for this gene is deoB [H]

Identifier: 15674915

GI number: 15674915

Start: 738003

End: 739214

Strand: Direct

Name: deoB [H]

Synonym: SPy_0890

Alternate gene names: 15674915

Gene position: 738003-739214 (Clockwise)

Preceding gene: 15674914

Following gene: 15674916

Centisome position: 39.84

GC content: 42.49

Gene sequence:

>1212_bases
ATGTCAAAATTTAATCGTATTCACTTGGTTGTTTTAGACTCTGTCGGTATTGGTGCAGCACCAGATGCTGACAAATTCTT
TAATGCTGGTGTAGCTGATACAGATTCTGACACCCTCGGTCATATTTCAGAAGCAGCAGGCTTATCGGTTCCAAATATGG
CAAAAATTGGACTTGGAAACATTTCTCGTCCAATACCACTAAAAACTGTTCCAACAGAAGACAATCCTACTGGTTACGTG
ACCAAATTGGAAGAAGTATCTCTTGGAAAAGATACCATGACAGGCCATTGGGAAATTATGGGCTTGAACATTACGGAACC
TTTTGACACTTTCTGGAATGGTTTCCCAGAAGAGATTTTAACTAAGATTGAAGAATTCTCAGGCCGCAAAATCATTCGCG
AGGCCAACAAACCTTATTCAGGAACTGCGGTTATTGATGATTTTGGTCCGCGTCAAATGGAAACAGGTGAGTTGATTGTT
TACACCTCAGCAGACCCAGTGCTTCAAATTGCAGCCCATGAAGACATTATTCCTGTGGAAGAGCTTTACAAGATTTGTGA
ATATGCTCGCTCCATCACGCTTGAACGCCCTGCCCTTTTAGGCCGTATTATTGCGCGTCCTTATGTAGGCGACCCAGGAA
ACTTTACACGTACGGCTAACCGTCATGACTATGCAGTGTCTCCTTTCCAAGATACCGTTTTGAACAAACTGGCTGACGCA
GGTGTCCCAACTTATGCCGTTGGTAAGATTAATGACATCTTTAATGGTTCAGGTATTACAAACGACATGGGACATAATAA
GTCGAACAGCCATGGTATTGACACGCTTATTAAGACTCTTCAATTACCTGAGTTTACTAAGGGATTCTCCTTTACTAACC
TCGTTGATTTTGATGCCAACTTTGGTCATCGTCGTGACCCAGAGGGTTATCGCGACTGCTTGCATGAATTTGACAATCGC
CTACCTGAAATCATCGCAAATATGAAAGAAGACGATTTGCTTCTCATCACTGCTGACCATGGTAATGACCCAACCTATGC
AGGCACCGACCACACTCGTGAATACATTCCATTGCTTGCCTACTCTGTATCCTTTACTGGAAATGGTCTTATTCCACAAG
GGCATTTTGCGGATATTTCAGCAACTGTTGCAGAAAATTTTGGAGTTGATACAGCCATGATTGGGGAGTCATTCCTTAGT
CACTTAAAATAA

Upstream 100 bases:

>100_bases
TTAGAAGCGCCTACAGCAGGCTAGTCTTAGCATATAACAGCGTTAATATATTTTATAGGTATTGGGGAGTCAACCGTAAC
CTCCCCTAGATTGGAGACTT

Downstream 100 bases:

>100_bases
GAAAGTTAGTAATTGATAATGGAAGAAATCACGATTTATCATAATCCAAACTGTGGCACTTCACGTAATGTTCTTGCCAT
GATTCGCCATGCAGGTATTG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MSKFNRIHLVVLDSVGIGAAPDADKFFNAGVADTDSDTLGHISEAAGLSVPNMAKIGLGNISRPIPLKTVPTEDNPTGYV
TKLEEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEEILTKIEEFSGRKIIREANKPYSGTAVIDDFGPRQMETGELIV
YTSADPVLQIAAHEDIIPVEELYKICEYARSITLERPALLGRIIARPYVGDPGNFTRTANRHDYAVSPFQDTVLNKLADA
GVPTYAVGKINDIFNGSGITNDMGHNKSNSHGIDTLIKTLQLPEFTKGFSFTNLVDFDANFGHRRDPEGYRDCLHEFDNR
LPEIIANMKEDDLLLITADHGNDPTYAGTDHTREYIPLLAYSVSFTGNGLIPQGHFADISATVAENFGVDTAMIGESFLS
HLK

Sequences:

>Translated_403_residues
MSKFNRIHLVVLDSVGIGAAPDADKFFNAGVADTDSDTLGHISEAAGLSVPNMAKIGLGNISRPIPLKTVPTEDNPTGYV
TKLEEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEEILTKIEEFSGRKIIREANKPYSGTAVIDDFGPRQMETGELIV
YTSADPVLQIAAHEDIIPVEELYKICEYARSITLERPALLGRIIARPYVGDPGNFTRTANRHDYAVSPFQDTVLNKLADA
GVPTYAVGKINDIFNGSGITNDMGHNKSNSHGIDTLIKTLQLPEFTKGFSFTNLVDFDANFGHRRDPEGYRDCLHEFDNR
LPEIIANMKEDDLLLITADHGNDPTYAGTDHTREYIPLLAYSVSFTGNGLIPQGHFADISATVAENFGVDTAMIGESFLS
HLK
>Mature_402_residues
SKFNRIHLVVLDSVGIGAAPDADKFFNAGVADTDSDTLGHISEAAGLSVPNMAKIGLGNISRPIPLKTVPTEDNPTGYVT
KLEEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEEILTKIEEFSGRKIIREANKPYSGTAVIDDFGPRQMETGELIVY
TSADPVLQIAAHEDIIPVEELYKICEYARSITLERPALLGRIIARPYVGDPGNFTRTANRHDYAVSPFQDTVLNKLADAG
VPTYAVGKINDIFNGSGITNDMGHNKSNSHGIDTLIKTLQLPEFTKGFSFTNLVDFDANFGHRRDPEGYRDCLHEFDNRL
PEIIANMKEDDLLLITADHGNDPTYAGTDHTREYIPLLAYSVSFTGNGLIPQGHFADISATVAENFGVDTAMIGESFLSH
LK

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=427, Percent_Identity=39.8126463700234, Blast_Score=271, Evalue=5e-74,
Organism=Escherichia coli, GI1789781, Length=426, Percent_Identity=28.8732394366197, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 44224; Mature: 44093

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKFNRIHLVVLDSVGIGAAPDADKFFNAGVADTDSDTLGHISEAAGLSVPNMAKIGLGN
CCCCCEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHCCCCC
ISRPIPLKTVPTEDNPTGYVTKLEEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEEIL
CCCCCCCEECCCCCCCCCEEEEHHHHCCCCCCCCCEEEEEEECCCCHHHHHHCCCCHHHH
TKIEEFSGRKIIREANKPYSGTAVIDDFGPRQMETGELIVYTSADPVLQIAAHEDIIPVE
HHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCCHH
ELYKICEYARSITLERPALLGRIIARPYVGDPGNFTRTANRHDYAVSPFQDTVLNKLADA
HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
GVPTYAVGKINDIFNGSGITNDMGHNKSNSHGIDTLIKTLQLPEFTKGFSFTNLVDFDAN
CCCEEEECCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHCCCCCCEEEECCCC
FGHRRDPEGYRDCLHEFDNRLPEIIANMKEDDLLLITADHGNDPTYAGTDHTREYIPLLA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHEEEE
YSVSFTGNGLIPQGHFADISATVAENFGVDTAMIGESFLSHLK
EEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SKFNRIHLVVLDSVGIGAAPDADKFFNAGVADTDSDTLGHISEAAGLSVPNMAKIGLGN
CCCCEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHCCCCC
ISRPIPLKTVPTEDNPTGYVTKLEEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEEIL
CCCCCCCEECCCCCCCCCEEEEHHHHCCCCCCCCCEEEEEEECCCCHHHHHHCCCCHHHH
TKIEEFSGRKIIREANKPYSGTAVIDDFGPRQMETGELIVYTSADPVLQIAAHEDIIPVE
HHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCCHH
ELYKICEYARSITLERPALLGRIIARPYVGDPGNFTRTANRHDYAVSPFQDTVLNKLADA
HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
GVPTYAVGKINDIFNGSGITNDMGHNKSNSHGIDTLIKTLQLPEFTKGFSFTNLVDFDAN
CCCEEEECCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHCCCCCCEEEECCCC
FGHRRDPEGYRDCLHEFDNRLPEIIANMKEDDLLLITADHGNDPTYAGTDHTREYIPLLA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHEEEE
YSVSFTGNGLIPQGHFADISATVAENFGVDTAMIGESFLSHLK
EEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA