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The map label for this gene is rimM

Identifier: 15674881

GI number: 15674881

Start: 700017

End: 700535

Strand: Direct

Name: rimM

Synonym: SPy_0847

Alternate gene names: 15674881

Gene position: 700017-700535 (Clockwise)

Preceding gene: 15674880

Following gene: 15674882

Centisome position: 37.79

GC content: 36.8

Gene sequence:

>519_bases
ATGGAATATTTTAATGTTGGAAAAATTGTCAACACGCAAGGCCTGCAAGGAGAGATGCGCGTGTTGTCTGTCAGTGATTT
TGCTGAGGAACGCTTTAAAAAAGGCTCACAATTAGCTTTATTTGATGATAAAGATCGGTTTGTTCAAGAAGTGACAATTG
TTAGTCACCGTAAACAAAAGCATTTTGATATTATCAAATTTAAAGACATGTATCATATTAATGCTATTGAAAAGTACAAG
GGATACACTTTAAAGGTCTCAAAAGACAATCAAGGGGATTTACAAGAAGGAGAATTTTATTACCATCAGATTATTGGCAT
GGCTGTTTATGAAAAGGATGTCCTTATTGGACATGTTAAGGAAATCTTGCAGCCAGGTGCTAATGATGTTTGGATAGTGA
AACGCCAAGGAAAACGAGACTTGCTCTTACCATATATTCCCCCAGTAGTTCTTAACGTAGATGTTCCTAACAAGCGCGTG
GATGTTGAATTGATGGAAGGCTTAGACGATGAAGATTGA

Upstream 100 bases:

>100_bases
AGGTAATTTGGTTCTGAAAAAGAAGTGTCTATCAAACTTTAGAATCAAGAGAGGTCGCTAAAGTGACGTGAGATAAAGAG
TTAACGATTTAGGAGCTACC

Downstream 100 bases:

>100_bases
TATTTTAACCCTTTTTCCTGAAATGTTTGCCCCTCTAGAGCATTCCATTGTAGGCAAGGCAAAAGAAAAAGGTCTGTTAG
ACATTCACTACCATAACTTT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MEYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDRFVQEVTIVSHRKQKHFDIIKFKDMYHINAIEKYK
GYTLKVSKDNQGDLQEGEFYYHQIIGMAVYEKDVLIGHVKEILQPGANDVWIVKRQGKRDLLLPYIPPVVLNVDVPNKRV
DVELMEGLDDED

Sequences:

>Translated_172_residues
MEYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDRFVQEVTIVSHRKQKHFDIIKFKDMYHINAIEKYK
GYTLKVSKDNQGDLQEGEFYYHQIIGMAVYEKDVLIGHVKEILQPGANDVWIVKRQGKRDLLLPYIPPVVLNVDVPNKRV
DVELMEGLDDED
>Mature_172_residues
MEYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDRFVQEVTIVSHRKQKHFDIIKFKDMYHINAIEKYK
GYTLKVSKDNQGDLQEGEFYYHQIIGMAVYEKDVLIGHVKEILQPGANDVWIVKRQGKRDLLLPYIPPVVLNVDVPNKRV
DVELMEGLDDED

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_STRP1 (P58183)

Other databases:

- EMBL:   AE004092
- EMBL:   CP000017
- RefSeq:   NP_269055.1
- RefSeq:   YP_282018.1
- ProteinModelPortal:   P58183
- EnsemblBacteria:   EBSTRT00000000417
- EnsemblBacteria:   EBSTRT00000028103
- GeneID:   3572245
- GeneID:   901012
- GenomeReviews:   AE004092_GR
- GenomeReviews:   CP000017_GR
- KEGG:   spy:SPy_0847
- KEGG:   spz:M5005_Spy_0655
- GeneTree:   EBGT00070000032134
- HOGENOM:   HBG703775
- OMA:   NDVYWIK
- ProtClustDB:   PRK00122
- BioCyc:   SPYO160490:SPY0847-MONOMER
- BioCyc:   SPYO293653:M5005_SPY0655-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19991; Mature: 19991

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDRFVQEVTIVSHRKQK
CCEECCCCEECCCCCCCCEEEEEHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCC
HFDIIKFKDMYHINAIEKYKGYTLKVSKDNQGDLQEGEFYYHQIIGMAVYEKDVLIGHVK
CCCEEEECCEEEECHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EILQPGANDVWIVKRQGKRDLLLPYIPPVVLNVDVPNKRVDVELMEGLDDED
HHHCCCCCCEEEEEECCCCCEECCCCCCEEEEECCCCCEECHHHHCCCCCCC
>Mature Secondary Structure
MEYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDRFVQEVTIVSHRKQK
CCEECCCCEECCCCCCCCEEEEEHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCC
HFDIIKFKDMYHINAIEKYKGYTLKVSKDNQGDLQEGEFYYHQIIGMAVYEKDVLIGHVK
CCCEEEECCEEEECHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EILQPGANDVWIVKRQGKRDLLLPYIPPVVLNVDVPNKRVDVELMEGLDDED
HHHCCCCCCEEEEEECCCCCEECCCCCCEEEEECCCCCEECHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296