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The map label for this gene is pepD

Identifier: 15674771

GI number: 15674771

Start: 570469

End: 571887

Strand: Direct

Name: pepD

Synonym: SPy_0713

Alternate gene names: 15674771

Gene position: 570469-571887 (Clockwise)

Preceding gene: 15674768

Following gene: 15674772

Centisome position: 30.8

GC content: 42.49

Gene sequence:

>1419_bases
ATGGATAAAAAAATACAGCGTTTTTCATGTACAACTATACTCGTCGGTAAAAAGGCATCTTATGATGGCTCAACCATGGT
TGCTCGAACAGAAGATTCTCAAAATGGTGATTTCACGCCTAAAAAAATGATTGTGGTGAAACCAGAAGATCAACCGAGAC
ATTACCGTTCGGTGCAATCTTCCTTTGAAATGGACTTACCGGACAATCCCATGACTTACACGTCTGTTCCCGATGCGCTT
GGTAAAGATGGTATCTGGGCAGAAGCAGGCGTGAACGAGGCTAATGTGGCCATGTCAGCAACTGAAACCATCACTACCAA
TTCTCGTGTTTTAGGGGCAGATCCTCTAGTAGCTTCTGGTATTGGTGAGGAGGACATGGTGACCTTAGTGCTCCCTTATA
TCCGTTCTGCGCGTGAAGGGGTTTTGCGCCTTGGTGCCATTTTAGAAGACTATGGCACTTACGAGTCAAATGGTGTGGCT
TTTTCAGATGAACATGACATTTGGTGGCTGGAAACGATTGGTGGTCATCACTGGATTGCAAGACGGGTGCCAGATGATGC
TTATGTCACCAATCCCAATCAATTTGGCATTGATCATTTTGAATTTAACAATCCTGAAGATTACCTTTGCTCAGCTGATT
TAAAGGACTTTATTGACACGTATCACTTAGATTTAACCTATAGCCATGAGCATTTTAATCCGCGCTATGCCTTTGGTAGT
CAACGTGACAAAGACCGTCAGTATAATACGCCACGTGCTTGGATCATGCAAAAATTCTTAAACCCAGAAATTGTGCAAGA
CCCGCGCAGCTTTGCCCTTGCTTGGTGTCAAAAACCTTACCGTAAAATAACAGTAGAAGATGTCAAATATGTATTGAGTA
GTCACTATCAGGACACGGGTTATGACCCTTACGGTTCAGAAGGAACTCCTGTTAGTAAGAAAGTCTTTCGCCCTATTGGC
ATTAACCGTACCAGCCAAACCGCTATCTTACACATTCGTCCTAATAAACCTCAAGAAATTGCCGCTATTCAATGGATGGC
TTATGGGTCAATGCCATTTAATACCATGGTGCCTTTTTTCACACAGGTGAAGACTATTCCAGATTATTTTGCCAACACTT
ACGAAAATGTGTTTACCGACAATTTCTATTGGACCAACCGTCTGATTGCGGCTTTGGCAGATCCTCACTACAATCATCAT
GAAACTGATTTGGACAATTACTTGGAAGAAACCATGGCAAAAGGTCATGCCATGTTACATGCTGTGGAAGTACAGTTATT
GGCTGGTGAAACAGTCGATTTGGAAGAGGAAAATCAAAAAATGAGTGACTATGTGCAAGGAGAAACGCAGACGCTGTTGA
ACAAGATTCTCTTTGACGCTAGCAATCTAATGACCAATCGTTTCAGTTTGAGCGATTAA

Upstream 100 bases:

>100_bases
TACGAATAATAAGATAAGGAGGTGCTGCTGGAATTATGAAAATTTTTGTATCCAGTTCAATGGATATTTGATATAATCGT
CTTAAAAAGGAGGTCGTGAA

Downstream 100 bases:

>100_bases
TAGTGAAGCTAAGGCTGAGCAACTGCTTAGCCTTTTTTACGATAACTTTTTAGGAAAAGTAATCGCAAAAAGACAAAAAC
TTGGAAAAAAAATCAAAGTA

Product: putative dipeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MDKKIQRFSCTTILVGKKASYDGSTMVARTEDSQNGDFTPKKMIVVKPEDQPRHYRSVQSSFEMDLPDNPMTYTSVPDAL
GKDGIWAEAGVNEANVAMSATETITTNSRVLGADPLVASGIGEEDMVTLVLPYIRSAREGVLRLGAILEDYGTYESNGVA
FSDEHDIWWLETIGGHHWIARRVPDDAYVTNPNQFGIDHFEFNNPEDYLCSADLKDFIDTYHLDLTYSHEHFNPRYAFGS
QRDKDRQYNTPRAWIMQKFLNPEIVQDPRSFALAWCQKPYRKITVEDVKYVLSSHYQDTGYDPYGSEGTPVSKKVFRPIG
INRTSQTAILHIRPNKPQEIAAIQWMAYGSMPFNTMVPFFTQVKTIPDYFANTYENVFTDNFYWTNRLIAALADPHYNHH
ETDLDNYLEETMAKGHAMLHAVEVQLLAGETVDLEEENQKMSDYVQGETQTLLNKILFDASNLMTNRFSLSD

Sequences:

>Translated_472_residues
MDKKIQRFSCTTILVGKKASYDGSTMVARTEDSQNGDFTPKKMIVVKPEDQPRHYRSVQSSFEMDLPDNPMTYTSVPDAL
GKDGIWAEAGVNEANVAMSATETITTNSRVLGADPLVASGIGEEDMVTLVLPYIRSAREGVLRLGAILEDYGTYESNGVA
FSDEHDIWWLETIGGHHWIARRVPDDAYVTNPNQFGIDHFEFNNPEDYLCSADLKDFIDTYHLDLTYSHEHFNPRYAFGS
QRDKDRQYNTPRAWIMQKFLNPEIVQDPRSFALAWCQKPYRKITVEDVKYVLSSHYQDTGYDPYGSEGTPVSKKVFRPIG
INRTSQTAILHIRPNKPQEIAAIQWMAYGSMPFNTMVPFFTQVKTIPDYFANTYENVFTDNFYWTNRLIAALADPHYNHH
ETDLDNYLEETMAKGHAMLHAVEVQLLAGETVDLEEENQKMSDYVQGETQTLLNKILFDASNLMTNRFSLSD
>Mature_472_residues
MDKKIQRFSCTTILVGKKASYDGSTMVARTEDSQNGDFTPKKMIVVKPEDQPRHYRSVQSSFEMDLPDNPMTYTSVPDAL
GKDGIWAEAGVNEANVAMSATETITTNSRVLGADPLVASGIGEEDMVTLVLPYIRSAREGVLRLGAILEDYGTYESNGVA
FSDEHDIWWLETIGGHHWIARRVPDDAYVTNPNQFGIDHFEFNNPEDYLCSADLKDFIDTYHLDLTYSHEHFNPRYAFGS
QRDKDRQYNTPRAWIMQKFLNPEIVQDPRSFALAWCQKPYRKITVEDVKYVLSSHYQDTGYDPYGSEGTPVSKKVFRPIG
INRTSQTAILHIRPNKPQEIAAIQWMAYGSMPFNTMVPFFTQVKTIPDYFANTYENVFTDNFYWTNRLIAALADPHYNHH
ETDLDNYLEETMAKGHAMLHAVEVQLLAGETVDLEEENQKMSDYVQGETQTLLNKILFDASNLMTNRFSLSD

Specific function: Unknown

COG id: COG4690

COG function: function code E; Dipeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C69 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PEPDA_STRP1 (Q9A0M0)

Other databases:

- EMBL:   AE004092
- EMBL:   CP000017
- RefSeq:   NP_268945.1
- RefSeq:   YP_281905.1
- EnsemblBacteria:   EBSTRT00000000266
- EnsemblBacteria:   EBSTRT00000029053
- GeneID:   3572364
- GeneID:   900898
- GenomeReviews:   AE004092_GR
- GenomeReviews:   CP000017_GR
- KEGG:   spy:SPy_0713
- KEGG:   spz:M5005_Spy_0542
- GeneTree:   EBGT00050000026738
- HOGENOM:   HBG350888
- OMA:   HFEFNNP
- ProtClustDB:   CLSK877083
- BioCyc:   SPYO160490:SPY0713-MONOMER
- BioCyc:   SPYO293653:M5005_SPY0542-MONOMER
- GO:   GO:0006508
- InterPro:   IPR005322

Pfam domain/function: PF03577 Peptidase_C69

EC number: NA

Molecular weight: Translated: 53856; Mature: 53856

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: ACT_SITE 10-10

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKIQRFSCTTILVGKKASYDGSTMVARTEDSQNGDFTPKKMIVVKPEDQPRHYRSVQS
CCCCCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHH
SFEMDLPDNPMTYTSVPDALGKDGIWAEAGVNEANVAMSATETITTNSRVLGADPLVASG
HCCCCCCCCCCEECCCCHHHCCCCCEECCCCCCCCEEEECCCEEECCCEEECCCCHHHCC
IGEEDMVTLVLPYIRSAREGVLRLGAILEDYGTYESNGVAFSDEHDIWWLETIGGHHWIA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEECCCCEEEE
RRVPDDAYVTNPNQFGIDHFEFNNPEDYLCSADLKDFIDTYHLDLTYSHEHFNPRYAFGS
ECCCCCCEEECCCCCCCCCEECCCCHHHEECCHHHHHHHHEEEEEEECCCCCCCCCCCCC
QRDKDRQYNTPRAWIMQKFLNPEIVQDPRSFALAWCQKPYRKITVEDVKYVLSSHYQDTG
CCCCCCCCCCCHHHHHHHHCCCHHHCCHHHHHHHHHHCHHHEECHHHHHHHHHHCCCCCC
YDPYGSEGTPVSKKVFRPIGINRTSQTAILHIRPNKPQEIAAIQWMAYGSMPFNTMVPFF
CCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCHHEEEEEEEECCCCHHHHHHHH
TQVKTIPDYFANTYENVFTDNFYWTNRLIAALADPHYNHHETDLDNYLEETMAKGHAMLH
HHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEE
AVEVQLLAGETVDLEEENQKMSDYVQGETQTLLNKILFDASNLMTNRFSLSD
EEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDKKIQRFSCTTILVGKKASYDGSTMVARTEDSQNGDFTPKKMIVVKPEDQPRHYRSVQS
CCCCCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHH
SFEMDLPDNPMTYTSVPDALGKDGIWAEAGVNEANVAMSATETITTNSRVLGADPLVASG
HCCCCCCCCCCEECCCCHHHCCCCCEECCCCCCCCEEEECCCEEECCCEEECCCCHHHCC
IGEEDMVTLVLPYIRSAREGVLRLGAILEDYGTYESNGVAFSDEHDIWWLETIGGHHWIA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEECCCCEEEE
RRVPDDAYVTNPNQFGIDHFEFNNPEDYLCSADLKDFIDTYHLDLTYSHEHFNPRYAFGS
ECCCCCCEEECCCCCCCCCEECCCCHHHEECCHHHHHHHHEEEEEEECCCCCCCCCCCCC
QRDKDRQYNTPRAWIMQKFLNPEIVQDPRSFALAWCQKPYRKITVEDVKYVLSSHYQDTG
CCCCCCCCCCCHHHHHHHHCCCHHHCCHHHHHHHHHHCHHHEECHHHHHHHHHHCCCCCC
YDPYGSEGTPVSKKVFRPIGINRTSQTAILHIRPNKPQEIAAIQWMAYGSMPFNTMVPFF
CCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCHHEEEEEEEECCCCHHHHHHHH
TQVKTIPDYFANTYENVFTDNFYWTNRLIAALADPHYNHHETDLDNYLEETMAKGHAMLH
HHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEE
AVEVQLLAGETVDLEEENQKMSDYVQGETQTLLNKILFDASNLMTNRFSLSD
EEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11296296