Click here to switch to the map view.

The map label for this gene is yabF [H]

Identifier: 15674441

GI number: 15674441

Start: 225608

End: 226177

Strand: Direct

Name: yabF [H]

Synonym: SPy_0261

Alternate gene names: 15674441

Gene position: 225608-226177 (Clockwise)

Preceding gene: 15674440

Following gene: 15674442

Centisome position: 12.18

GC content: 44.39

Gene sequence:

>570_bases
TTGACTGAAAAAATTAATATTCAAGAGGTTCTTGTTGTAGAAGGCAAGGACGACACGGCTAACCTACGCCGTTTTTACGA
GGTGGATACCTATGAGACTAGAGGCTCTGCTATCACTGAAGAAGATTTAGAACGAATCAATCGCCTAAACGATTTGCGTG
GTGTTATCGTTTTAACAGACCCAGATTATAATGGTGAGCGCATTCGTAAGCTCATTATGGCTGCTGTGCCAACAGCTCGT
CATGCCTTTTTAAACCGAAACGAGGCGGTTCCGAGTTCTAAGAGTAAGGGTCGTTCCTTAGGGGTTGAACATGCCAATTT
TGAGGATCTCCAAAAGGCACTTGCTCATGTCACTCAGCAATATGATGATGAGTCTTATTTTGACATTCGTCAAACAGACC
TGATTCGTCTAGGGCTTTTAATGGCGTCAGATAGCCGTAAACGCAGGGAATACTTGGGTGAAAAGCTCCGCATCGGTTAT
GCCAACGGCAAACAACTGCTCAAGCGCCTCGAATTATTTGGCATTACCCTAGCAGAAGTGGAAGAAGTGATGGAGACATA
TGAGGAGTAA

Upstream 100 bases:

>100_bases
TATACCCGCTATGTGGTTGATAAAATCGCAGAGCTACGGGGGATGACTGTGGAAGAAGTTGCAAAAGCAACGACTGCTAA
TGCAAAGAGGGTATTCAAGC

Downstream 100 bases:

>100_bases
AGAGTACAATAAAATATAACGGCCCCATTAACTGAATGGCGTGTCCTGGCAAAAAAGTTTAGGCTAGTGGTTCAAATGCC
AAAAAGAAAGTGATCATAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MTEKINIQEVLVVEGKDDTANLRRFYEVDTYETRGSAITEEDLERINRLNDLRGVIVLTDPDYNGERIRKLIMAAVPTAR
HAFLNRNEAVPSSKSKGRSLGVEHANFEDLQKALAHVTQQYDDESYFDIRQTDLIRLGLLMASDSRKRREYLGEKLRIGY
ANGKQLLKRLELFGITLAEVEEVMETYEE

Sequences:

>Translated_189_residues
MTEKINIQEVLVVEGKDDTANLRRFYEVDTYETRGSAITEEDLERINRLNDLRGVIVLTDPDYNGERIRKLIMAAVPTAR
HAFLNRNEAVPSSKSKGRSLGVEHANFEDLQKALAHVTQQYDDESYFDIRQTDLIRLGLLMASDSRKRREYLGEKLRIGY
ANGKQLLKRLELFGITLAEVEEVMETYEE
>Mature_188_residues
TEKINIQEVLVVEGKDDTANLRRFYEVDTYETRGSAITEEDLERINRLNDLRGVIVLTDPDYNGERIRKLIMAAVPTARH
AFLNRNEAVPSSKSKGRSLGVEHANFEDLQKALAHVTQQYDDESYFDIRQTDLIRLGLLMASDSRKRREYLGEKLRIGYA
NGKQLLKRLELFGITLAEVEEVMETYEE

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 21797; Mature: 21666

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEKINIQEVLVVEGKDDTANLRRFYEVDTYETRGSAITEEDLERINRLNDLRGVIVLTD
CCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEC
PDYNGERIRKLIMAAVPTARHAFLNRNEAVPSSKSKGRSLGVEHANFEDLQKALAHVTQQ
CCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
YDDESYFDIRQTDLIRLGLLMASDSRKRREYLGEKLRIGYANGKQLLKRLELFGITLAEV
CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCHHEEECCCCHHHHHHHHHHHCCHHHHH
EEVMETYEE
HHHHHHHCC
>Mature Secondary Structure 
TEKINIQEVLVVEGKDDTANLRRFYEVDTYETRGSAITEEDLERINRLNDLRGVIVLTD
CCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEC
PDYNGERIRKLIMAAVPTARHAFLNRNEAVPSSKSKGRSLGVEHANFEDLQKALAHVTQQ
CCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
YDDESYFDIRQTDLIRLGLLMASDSRKRREYLGEKLRIGYANGKQLLKRLELFGITLAEV
CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCHHEEECCCCHHHHHHHHHHHCCHHHHH
EEVMETYEE
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]