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The map label for this gene is ybdM [H]

Identifier: 15674395

GI number: 15674395

Start: 177331

End: 177861

Strand: Direct

Name: ybdM [H]

Synonym: SPy_0190

Alternate gene names: 15674395

Gene position: 177331-177861 (Clockwise)

Preceding gene: 15674394

Following gene: 15674396

Centisome position: 9.57

GC content: 33.15

Gene sequence:

>531_bases
GTGAGTAATTTTATTAGTCCAGTCTATGAGATTAAATCAATTCCAATTGAAAAGATTTCTCCAAATGATTATAATCCGAA
TTCAGTTGCTCCGCCTGAAATGAAATTATTGTATGATAGTATAAAATCTGATGGTTATACTATGCCGATTGTTTGCTATT
ACGATAAGGAAGAGGATCGGTATAGTATTGTTGATGGTTTTCATAGATATCGTATAATGCTAGATTATTCAGATATTTAT
GAAAGGGAAAGTGGGAGATTACCTGTTTCTGTTATTGATAAGTCATTAGACTATCGAATGGCTTCTACCATTCGACATAA
TAGAGCTAGAGGAAGTCATGATGTTGATTTGATGAGTCAGATTGTAAAGGATCTTCATGAGTGTGGGCGAAGTGATAACT
GGATTGCAAAACATTTAGGAATGGATAAAGATGAAATTTTAAGACTGAAACAAATAACAGGATTGGCTTCTCTTTTTAAG
GACCATGAGTTTAATCAATCTTGGGAACCAGAAGAGCTATTAAATGAGTAA

Upstream 100 bases:

>100_bases
CATATTTGTCGAACTATGGGGTTTGGTTTGACAAGAGAGCAACAAAAAATAGTAGCCTTTTTAAAAGAGAAATATAAGAC
GAGTTTAAAGGAGTTAGAAA

Downstream 100 bases:

>100_bases
ACAGGAAGTAAGAGACTCATTGTCAACTGTAGTGGGTGACTTATCATTAACAACGAGAGAGAATCAGATTGGTTCTCTCT
TTTTGGATGTTCAAAGCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSNFISPVYEIKSIPIEKISPNDYNPNSVAPPEMKLLYDSIKSDGYTMPIVCYYDKEEDRYSIVDGFHRYRIMLDYSDIY
ERESGRLPVSVIDKSLDYRMASTIRHNRARGSHDVDLMSQIVKDLHECGRSDNWIAKHLGMDKDEILRLKQITGLASLFK
DHEFNQSWEPEELLNE

Sequences:

>Translated_176_residues
MSNFISPVYEIKSIPIEKISPNDYNPNSVAPPEMKLLYDSIKSDGYTMPIVCYYDKEEDRYSIVDGFHRYRIMLDYSDIY
ERESGRLPVSVIDKSLDYRMASTIRHNRARGSHDVDLMSQIVKDLHECGRSDNWIAKHLGMDKDEILRLKQITGLASLFK
DHEFNQSWEPEELLNE
>Mature_175_residues
SNFISPVYEIKSIPIEKISPNDYNPNSVAPPEMKLLYDSIKSDGYTMPIVCYYDKEEDRYSIVDGFHRYRIMLDYSDIYE
RESGRLPVSVIDKSLDYRMASTIRHNRARGSHDVDLMSQIVKDLHECGRSDNWIAKHLGMDKDEILRLKQITGLASLFKD
HEFNQSWEPEELLNE

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=162, Percent_Identity=48.7654320987654, Blast_Score=162, Evalue=8e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 20598; Mature: 20467

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNFISPVYEIKSIPIEKISPNDYNPNSVAPPEMKLLYDSIKSDGYTMPIVCYYDKEEDR
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCC
YSIVDGFHRYRIMLDYSDIYERESGRLPVSVIDKSLDYRMASTIRHNRARGSHDVDLMSQ
HHHHHHHHHEEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
IVKDLHECGRSDNWIAKHLGMDKDEILRLKQITGLASLFKDHEFNQSWEPEELLNE
HHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCC
>Mature Secondary Structure 
SNFISPVYEIKSIPIEKISPNDYNPNSVAPPEMKLLYDSIKSDGYTMPIVCYYDKEEDR
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCC
YSIVDGFHRYRIMLDYSDIYERESGRLPVSVIDKSLDYRMASTIRHNRARGSHDVDLMSQ
HHHHHHHHHEEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
IVKDLHECGRSDNWIAKHLGMDKDEILRLKQITGLASLFKDHEFNQSWEPEELLNE
HHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]