Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
---|---|
Accession | NC_002737 |
Length | 1,852,441 |
Click here to switch to the map view.
The map label for this gene is sgbU [H]
Identifier: 15674383
GI number: 15674383
Start: 163082
End: 163945
Strand: Direct
Name: sgbU [H]
Synonym: SPy_0178
Alternate gene names: 15674383
Gene position: 163082-163945 (Clockwise)
Preceding gene: 15674382
Following gene: 15674384
Centisome position: 8.8
GC content: 41.78
Gene sequence:
>864_bases ATGGCGCGTCCTATTGGTATTTATGAAAAAGCAACGCCAAAACAGTTTACCTGGCGTGAACGCTTGCAATTTGCAAAAGA CTTAGGTTTTGATTTTGTGGAAATGTCTGTTGATGAATCAGATGCTCGCTTAGCGCGCTTAGAGTGGACTAAGGAAGAAC GGCTTGATTTAGTGAAAGCCATTTATGAAACAGGCATTCGCATCCCGACCATTTGTTTTTCTGGTCATAGACGTTACCCA CTAGGCTCAAATGATCCTGCTATTGAAGCTAAGTCCCTTAAACTGATGAAACAATGTATTGAATTGGCACAGGACTTAGG CGTTCGTACCATTCAATTAGCTGGTTATGACGTTTACTATGAAAAAAAATCGCCTGAAACCCGTGCTCGTTTTATCAAAA ACTTGAGACAATCTTGTGACTGGGCCGAAGAAGCCCAAGTGATGCTTTCTATTGAGATTATGGATGACCCTTTTATCAAC TCTATTGAGAAATACTTGGCAGTTGAAAAAGAGATTGACTCGCCTTATCTCTTTGTTTATCCTGATGCAGGCAATGTTTC TGCTTGGCATAATGATTTGTGGAGTGAATTTTACAATGGGCACAAATCCATTGCAGCCCTCCACTTGAAAGATACTTATG CTGTCACGGAAACCTCAAAAGGGCAGTTTCGTGATGTGCCATTTGGTCAAGGTTGTGTGGACTGGCAAGAGCTGTTTGCG GTCCTCAAGAAAACCAACTACAATGGGCCTTTTTTGATTGAAATGTGGTCAGAAAATTGTGACACGGTGGAGGAAACAAA AGCTGCTATCAAAGAAGCTCAGGACTTCCTTTACCCACTTATTGAGAAAGCGGGGTTGACATAA
Upstream 100 bases:
>100_bases TTTACCTTTATCGCAGGGCGAGGCATTACTGAAGCAGAAGATCCTGCTGCAGCGGCGCGTGCCTTCAAAGATGAAATCAA ACGTATCTGGGGGTAACTTT
Downstream 100 bases:
>100_bases TATGGCGAAAAACTTGCAAGAAATGCGTGAACGTGTCTGTGCGGCTAACAAGTCTCTACCACAACACGGTCTTGTCAAAT TTACGTGGGGCAATGTCTCT
Product: putative L-xylulose 5-phosphate 3-epimerase
Products: NA
Alternate protein names: HUMPI [H]
Number of amino acids: Translated: 287; Mature: 286
Protein sequence:
>287_residues MARPIGIYEKATPKQFTWRERLQFAKDLGFDFVEMSVDESDARLARLEWTKEERLDLVKAIYETGIRIPTICFSGHRRYP LGSNDPAIEAKSLKLMKQCIELAQDLGVRTIQLAGYDVYYEKKSPETRARFIKNLRQSCDWAEEAQVMLSIEIMDDPFIN SIEKYLAVEKEIDSPYLFVYPDAGNVSAWHNDLWSEFYNGHKSIAALHLKDTYAVTETSKGQFRDVPFGQGCVDWQELFA VLKKTNYNGPFLIEMWSENCDTVEETKAAIKEAQDFLYPLIEKAGLT
Sequences:
>Translated_287_residues MARPIGIYEKATPKQFTWRERLQFAKDLGFDFVEMSVDESDARLARLEWTKEERLDLVKAIYETGIRIPTICFSGHRRYP LGSNDPAIEAKSLKLMKQCIELAQDLGVRTIQLAGYDVYYEKKSPETRARFIKNLRQSCDWAEEAQVMLSIEIMDDPFIN SIEKYLAVEKEIDSPYLFVYPDAGNVSAWHNDLWSEFYNGHKSIAALHLKDTYAVTETSKGQFRDVPFGQGCVDWQELFA VLKKTNYNGPFLIEMWSENCDTVEETKAAIKEAQDFLYPLIEKAGLT >Mature_286_residues ARPIGIYEKATPKQFTWRERLQFAKDLGFDFVEMSVDESDARLARLEWTKEERLDLVKAIYETGIRIPTICFSGHRRYPL GSNDPAIEAKSLKLMKQCIELAQDLGVRTIQLAGYDVYYEKKSPETRARFIKNLRQSCDWAEEAQVMLSIEIMDDPFINS IEKYLAVEKEIDSPYLFVYPDAGNVSAWHNDLWSEFYNGHKSIAALHLKDTYAVTETSKGQFRDVPFGQGCVDWQELFAV LKKTNYNGPFLIEMWSENCDTVEETKAAIKEAQDFLYPLIEKAGLT
Specific function: Isomerization of D-arabino-6-hexulose 3-phosphate to D- fructose 6-phosphate [H]
COG id: COG3623
COG function: function code G; Putative L-xylulose-5-phosphate 3-epimerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HUMPI family [H]
Homologues:
Organism=Escherichia coli, GI1790641, Length=284, Percent_Identity=51.056338028169, Blast_Score=305, Evalue=2e-84, Organism=Escherichia coli, GI87082294, Length=282, Percent_Identity=51.4184397163121, Blast_Score=297, Evalue=6e-82,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004560 - InterPro: IPR013022 - InterPro: IPR012307 [H]
Pfam domain/function: PF01261 AP_endonuc_2 [H]
EC number: 5.-.-.-
Molecular weight: Translated: 33101; Mature: 32970
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARPIGIYEKATPKQFTWRERLQFAKDLGFDFVEMSVDESDARLARLEWTKEERLDLVKA CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCHHHHHHHHHH IYETGIRIPTICFSGHRRYPLGSNDPAIEAKSLKLMKQCIELAQDLGVRTIQLAGYDVYY HHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECEEEEE EKKSPETRARFIKNLRQSCDWAEEAQVMLSIEIMDDPFINSIEKYLAVEKEIDSPYLFVY ECCCCHHHHHHHHHHHHHCCHHHHCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEE PDAGNVSAWHNDLWSEFYNGHKSIAALHLKDTYAVTETSKGQFRDVPFGQGCVDWQELFA CCCCCCCHHHHHHHHHHHCCCHHEEEEEEECCEEEEECCCCCEECCCCCCCCCCHHHHHH VLKKTNYNGPFLIEMWSENCDTVEETKAAIKEAQDFLYPLIEKAGLT HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ARPIGIYEKATPKQFTWRERLQFAKDLGFDFVEMSVDESDARLARLEWTKEERLDLVKA CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCHHHHHHHHHH IYETGIRIPTICFSGHRRYPLGSNDPAIEAKSLKLMKQCIELAQDLGVRTIQLAGYDVYY HHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECEEEEE EKKSPETRARFIKNLRQSCDWAEEAQVMLSIEIMDDPFINSIEKYLAVEKEIDSPYLFVY ECCCCHHHHHHHHHHHHHCCHHHHCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEE PDAGNVSAWHNDLWSEFYNGHKSIAALHLKDTYAVTETSKGQFRDVPFGQGCVDWQELFA CCCCCCCHHHHHHHHHHHCCCHHEEEEEEECCEEEEECCCCCEECCCCCCCCCCHHHHHH VLKKTNYNGPFLIEMWSENCDTVEETKAAIKEAQDFLYPLIEKAGLT HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]