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The map label for this gene is ytgE

Identifier: 15673880

GI number: 15673880

Start: 1965865

End: 1966218

Strand: Reverse

Name: ytgE

Synonym: L149295

Alternate gene names: 15673880

Gene position: 1966218-1965865 (Counterclockwise)

Preceding gene: 15673881

Following gene: 15673879

Centisome position: 83.12

GC content: 36.72

Gene sequence:

>354_bases
ATGATGTTAGAACCTTCAATTGACAAGTTATTGGACCAAGTTGATTCAAAATATTCTTTAGTAGTTTTGGAAGCAAAACG
TGCGCATGAATTGCGTGATAAAGAACGCCCAACAAAAGAATTTAAAGCTGTAAAAAATACTTTGCGTGCTTTGGAAGAAA
TTGCTGATGGAACAGTTAAAATTCACCCATCACCTGAATTGAAACGTGAAACTTTAGTTGAAAAACGCGAATTGGAACGT
TTGCAAGCTAAGATGAAAGAACAACTCATCAAAGAGCAAATTGCTAAAGAAGAAGCTGAAGAAGAAGCAAAACAAAAAAA
TAGCCGCGCCGCTAAAGCAGCTGCCGCAGAATAA

Upstream 100 bases:

>100_bases
TGATTAAGTTGATAAATTTTACTGACAGAATTGTATTTTGACGATAACAAGTCTGTCAGTAAAAATAGAATGAAAAGTTT
AGAAAATGAGGTAATGAATT

Downstream 100 bases:

>100_bases
ATTTTTTAAGCGTCAATTGGCGCTTTTTTTATTTCTAAAAGTTACTGACAGCTTTGTCAGTAAGAAGCGGATAAGTCAAA
AGCAGGAAAAATGCTTTTCT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MMLEPSIDKLLDQVDSKYSLVVLEAKRAHELRDKERPTKEFKAVKNTLRALEEIADGTVKIHPSPELKRETLVEKRELER
LQAKMKEQLIKEQIAKEEAEEEAKQKNSRAAKAAAAE

Sequences:

>Translated_117_residues
MMLEPSIDKLLDQVDSKYSLVVLEAKRAHELRDKERPTKEFKAVKNTLRALEEIADGTVKIHPSPELKRETLVEKRELER
LQAKMKEQLIKEQIAKEEAEEEAKQKNSRAAKAAAAE
>Mature_117_residues
MMLEPSIDKLLDQVDSKYSLVVLEAKRAHELRDKERPTKEFKAVKNTLRALEEIADGTVKIHPSPELKRETLVEKRELER
LQAKMKEQLIKEQIAKEEAEEEAKQKNSRAAKAAAAE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_LACLA (Q9CEE4)

Other databases:

- EMBL:   AE005176
- PIR:   B86862
- RefSeq:   NP_268055.1
- ProteinModelPortal:   Q9CEE4
- SMR:   Q9CEE4
- GeneID:   1115563
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L149295
- NMPDR:   fig|272623.1.peg.1944
- HOGENOM:   HBG742204
- OMA:   RDKERPT
- ProtClustDB:   PRK00392
- BioCyc:   LLAC272623:L149295-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 13435; Mature: 13435

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLEPSIDKLLDQVDSKYSLVVLEAKRAHELRDKERPTKEFKAVKNTLRALEEIADGTVK
CCCCCCHHHHHHHHCCCHHHEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEE
IHPSPELKRETLVEKRELERLQAKMKEQLIKEQIAKEEAEEEAKQKNSRAAKAAAAE
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMLEPSIDKLLDQVDSKYSLVVLEAKRAHELRDKERPTKEFKAVKNTLRALEEIADGTVK
CCCCCCHHHHHHHHCCCHHHEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEE
IHPSPELKRETLVEKRELERLQAKMKEQLIKEQIAKEEAEEEAKQKNSRAAKAAAAE
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471