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The map label for this gene is ysbD

Identifier: 15673740

GI number: 15673740

Start: 1815855

End: 1816511

Strand: Reverse

Name: ysbD

Synonym: L199206

Alternate gene names: 15673740

Gene position: 1816511-1815855 (Counterclockwise)

Preceding gene: 15673743

Following gene: 15673739

Centisome position: 76.79

GC content: 36.07

Gene sequence:

>657_bases
ATGTTTGTACAACTTTCGATTTTTGGTTTCTTTAATGACTGGATGGCTAATTTTGCCCAGATGCCTAATGGTCATATTTG
GATATATGTTGTTTTAGGGGCGATTATTTTTATTGAAACAGGATTAGTGATTTTCCCCTTCTTTCCTGGGGATTCCATTT
TATTTTTTGTTGGTTCTTTGGCAGCAATGTCAAACGGAAAATTATCTATTGGCTTATTGATTTTGGTGATGGGGATTATT
GCCTTCATTGCTAATCTGTTGAATTATGAAATTGGTCGAAGATTTGGGGATGTCATTCCAAAACATAAATGGCTTTCTCG
TTTCTTAAAACCAGAATATATGGAAGAAGCTCATCAATTTTTTGAAAAATGGGGTTCTTGGGCCATTTTCTTAGGGCGAT
TCATGCCAATCATTCGGACGATTGTTCCATTTACAGCTGGTGCTGGTAAAATGCCACATAAAAAGTTTATTTTCTTTAAC
TTCATCGGTGGTTTTGCTTGGGTTATTGTTGCCTTAGGTGCAGGCTATTTATTTGGTGGAATTCCTTTTGTTAAAAAACA
TTTTGAAATCATCATGATTGCCATTGTCTTTGTGTCACTACTACCGGCAATTATTGGCATTTTGAAACGCGTTCTTGGAA
GTCGCAAGGAAGCTTAA

Upstream 100 bases:

>100_bases
TGTAAAATTGAACGAGTGCTTGAATGAATTCTTTATGGATGTATTCTATTTAAGTAAACAGAACTATTGTAAGAATTTTT
AACTTTTGAAAAGGAATATT

Downstream 100 bases:

>100_bases
CTTTATGATAAAATAGGACTTACAAAACTGTCAGTCCTTTTTTTTATCGATTGATATGTCAATGACAATAGAATTTACTG
ACAAAGACACTAGCATAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MFVQLSIFGFFNDWMANFAQMPNGHIWIYVVLGAIIFIETGLVIFPFFPGDSILFFVGSLAAMSNGKLSIGLLILVMGII
AFIANLLNYEIGRRFGDVIPKHKWLSRFLKPEYMEEAHQFFEKWGSWAIFLGRFMPIIRTIVPFTAGAGKMPHKKFIFFN
FIGGFAWVIVALGAGYLFGGIPFVKKHFEIIMIAIVFVSLLPAIIGILKRVLGSRKEA

Sequences:

>Translated_218_residues
MFVQLSIFGFFNDWMANFAQMPNGHIWIYVVLGAIIFIETGLVIFPFFPGDSILFFVGSLAAMSNGKLSIGLLILVMGII
AFIANLLNYEIGRRFGDVIPKHKWLSRFLKPEYMEEAHQFFEKWGSWAIFLGRFMPIIRTIVPFTAGAGKMPHKKFIFFN
FIGGFAWVIVALGAGYLFGGIPFVKKHFEIIMIAIVFVSLLPAIIGILKRVLGSRKEA
>Mature_218_residues
MFVQLSIFGFFNDWMANFAQMPNGHIWIYVVLGAIIFIETGLVIFPFFPGDSILFFVGSLAAMSNGKLSIGLLILVMGII
AFIANLLNYEIGRRFGDVIPKHKWLSRFLKPEYMEEAHQFFEKWGSWAIFLGRFMPIIRTIVPFTAGAGKMPHKKFIFFN
FIGGFAWVIVALGAGYLFGGIPFVKKHFEIIMIAIVFVSLLPAIIGILKRVLGSRKEA

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=185, Percent_Identity=40.5405405405405, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1789384, Length=191, Percent_Identity=34.5549738219895, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1789481, Length=181, Percent_Identity=33.7016574585635, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24593; Mature: 24593

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVQLSIFGFFNDWMANFAQMPNGHIWIYVVLGAIIFIETGLVIFPFFPGDSILFFVGSL
CEEEEEHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHH
AAMSNGKLSIGLLILVMGIIAFIANLLNYEIGRRFGDVIPKHKWLSRFLKPEYMEEAHQF
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHH
FEKWGSWAIFLGRFMPIIRTIVPFTAGAGKMPHKKFIFFNFIGGFAWVIVALGAGYLFGG
HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
IPFVKKHFEIIMIAIVFVSLLPAIIGILKRVLGSRKEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MFVQLSIFGFFNDWMANFAQMPNGHIWIYVVLGAIIFIETGLVIFPFFPGDSILFFVGSL
CEEEEEHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHH
AAMSNGKLSIGLLILVMGIIAFIANLLNYEIGRRFGDVIPKHKWLSRFLKPEYMEEAHQF
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHH
FEKWGSWAIFLGRFMPIIRTIVPFTAGAGKMPHKKFIFFNFIGGFAWVIVALGAGYLFGG
HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
IPFVKKHFEIIMIAIVFVSLLPAIIGILKRVLGSRKEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]