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The map label for this gene is yrfC

Identifier: 15673679

GI number: 15673679

Start: 1752980

End: 1754080

Strand: Reverse

Name: yrfC

Synonym: L136332

Alternate gene names: 15673679

Gene position: 1754080-1752980 (Counterclockwise)

Preceding gene: 15673681

Following gene: 15673678

Centisome position: 74.15

GC content: 38.69

Gene sequence:

>1101_bases
ATGGCAAAACGTATTATTGGTACAACACCAAAAGAAGATGGTTTTCGGATGCCTGGTGAATTTGAAGCTCAAGATCAAAT
TTTTATGATCTGGCCCGAACGTCCAGATAACTGGCGTGATGGAGCAAAACCTGTTCAGATTGCCTTTACTAATGTTGCTA
AAGCAATTAGTAGATTTACACCAGTAACAATGTTAGTTTCACAATCCCAATATCAAAATGCTCGTTATCAATTACCCGCT
GATGTGCGTGTGCTTGAAGTTTCTAACAACGACTCTTGGGTTCGTGACTGTGGGCCAAGTTTTGTAATTAATGATAAGGG
CGAACTTCGAGCAAATGACTGGACTTTTAACGCTTGGGGTGGACTTGTTGATGGTCTATATTTTCCTTGGGATCAAGATG
ATCTAGTGGCACAAAAAGTTTGTGAATTAGAACGTGTTGACTCTTATCGGACAGATGATTTTGTTCTTGAAGGAGGTTCA
TTCCATGTTGACGGTCAAGGAACAGTTTTGACTACTGAAATGTGCCTTTTATCTGAAGGACGCAATCCTCACATGAGCAA
AGAGGACATTGAAAATAAACTTAAAGAACATTTGAATGCTGAAAAAATTCTTTGGCTTGGGGATGGAATTGACCCAGAAG
AAACAAACGGTCACGTGGATGATGTTGCTTGCTTCGTAGCGCCAGGGGAAGTTGCATGCATTTATACTGAGGATGAGAAG
TCACCTTTTTATGAAGCAGCACAAGATGCTTATAAACGCTTGAACCAAATGACAGATGCTAAAGGACGTCAACTCAAGGT
TCATAAATTGACTTGTCCAGCTAAAAATGTAACGATTAAAAAACAATTTAGAATTGATACAGTTGAAGGAACAATGCCAC
GTGAAGATGGAGATATTTGTATTGCTTCATATATGAATTTTTTGATTACAAACAAAGGAGTTATCGTACCACAATACGGT
GATGAAAATGATGCTCTAGCACTAAAACAAGTTCAAGAGATGTTTCCAGACCGCGAAATAGTTGGCGTGAACACTGTTGA
AGTAGTTTATGGTGGAGGAAATATCCATTGTATTACTCAACAACAACCTAAAGCCAAATAA

Upstream 100 bases:

>100_bases
AGATTCAGATGTTTTTTGCTTGACTCAAGGTGGCTAACTTCATTTTACAATTTGCGATTAATTATTAAATTTAAAAAAAT
AAAAAAATAGGAGAGAAAAA

Downstream 100 bases:

>100_bases
GGAGTAGAGAGGATTTAACAGAAAATGGCAAAACGTATTGTAGTTGCTCTAGGGGGGAATGCTATTTTAACTAGCGACCC
TACAGCGCAAGCACAATCTA

Product: agmatine deiminase

Products: NA

Alternate protein names: Agmatine iminohydrolase

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MAKRIIGTTPKEDGFRMPGEFEAQDQIFMIWPERPDNWRDGAKPVQIAFTNVAKAISRFTPVTMLVSQSQYQNARYQLPA
DVRVLEVSNNDSWVRDCGPSFVINDKGELRANDWTFNAWGGLVDGLYFPWDQDDLVAQKVCELERVDSYRTDDFVLEGGS
FHVDGQGTVLTTEMCLLSEGRNPHMSKEDIENKLKEHLNAEKILWLGDGIDPEETNGHVDDVACFVAPGEVACIYTEDEK
SPFYEAAQDAYKRLNQMTDAKGRQLKVHKLTCPAKNVTIKKQFRIDTVEGTMPREDGDICIASYMNFLITNKGVIVPQYG
DENDALALKQVQEMFPDREIVGVNTVEVVYGGGNIHCITQQQPKAK

Sequences:

>Translated_366_residues
MAKRIIGTTPKEDGFRMPGEFEAQDQIFMIWPERPDNWRDGAKPVQIAFTNVAKAISRFTPVTMLVSQSQYQNARYQLPA
DVRVLEVSNNDSWVRDCGPSFVINDKGELRANDWTFNAWGGLVDGLYFPWDQDDLVAQKVCELERVDSYRTDDFVLEGGS
FHVDGQGTVLTTEMCLLSEGRNPHMSKEDIENKLKEHLNAEKILWLGDGIDPEETNGHVDDVACFVAPGEVACIYTEDEK
SPFYEAAQDAYKRLNQMTDAKGRQLKVHKLTCPAKNVTIKKQFRIDTVEGTMPREDGDICIASYMNFLITNKGVIVPQYG
DENDALALKQVQEMFPDREIVGVNTVEVVYGGGNIHCITQQQPKAK
>Mature_365_residues
AKRIIGTTPKEDGFRMPGEFEAQDQIFMIWPERPDNWRDGAKPVQIAFTNVAKAISRFTPVTMLVSQSQYQNARYQLPAD
VRVLEVSNNDSWVRDCGPSFVINDKGELRANDWTFNAWGGLVDGLYFPWDQDDLVAQKVCELERVDSYRTDDFVLEGGSF
HVDGQGTVLTTEMCLLSEGRNPHMSKEDIENKLKEHLNAEKILWLGDGIDPEETNGHVDDVACFVAPGEVACIYTEDEKS
PFYEAAQDAYKRLNQMTDAKGRQLKVHKLTCPAKNVTIKKQFRIDTVEGTMPREDGDICIASYMNFLITNKGVIVPQYGD
ENDALALKQVQEMFPDREIVGVNTVEVVYGGGNIHCITQQQPKAK

Specific function: Unknown

COG id: COG2957

COG function: function code E; Peptidylarginine deiminase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the agmatine deiminase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): AGUA_LACLA (Q9CEY6)

Other databases:

- EMBL:   AE005176
- PIR:   A86837
- RefSeq:   NP_267853.1
- ProteinModelPortal:   Q9CEY6
- SMR:   Q9CEY6
- GeneID:   1115360
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L136332
- NMPDR:   fig|272623.1.peg.1741
- HOGENOM:   HBG668771
- OMA:   FLIVNGG
- ProtClustDB:   PRK13551
- BioCyc:   LLAC272623:L136332-MONOMER
- HAMAP:   MF_01841
- InterPro:   IPR017754
- InterPro:   IPR007466
- TIGRFAMs:   TIGR03380

Pfam domain/function: PF04371 PAD_porph

EC number: =3.5.3.12

Molecular weight: Translated: 41268; Mature: 41137

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: ACT_SITE 357-357

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRIIGTTPKEDGFRMPGEFEAQDQIFMIWPERPDNWRDGAKPVQIAFTNVAKAISRFT
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHCC
PVTMLVSQSQYQNARYQLPADVRVLEVSNNDSWVRDCGPSFVINDKGELRANDWTFNAWG
CCEEEEECHHHCCCCEECCCCEEEEEECCCCCCHHHCCCCEEECCCCCEEECCEEEECCC
GLVDGLYFPWDQDDLVAQKVCELERVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEG
HHHCCEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCEEECCCCCEEEEEEHHHHCC
RNPHMSKEDIENKLKEHLNAEKILWLGDGIDPEETNGHVDDVACFVAPGEVACIYTEDEK
CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCC
SPFYEAAQDAYKRLNQMTDAKGRQLKVHKLTCPAKNVTIKKQFRIDTVEGTMPREDGDIC
CCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCEE
IASYMNFLITNKGVIVPQYGDENDALALKQVQEMFPDREIVGVNTVEVVYGGGNIHCITQ
HHHHHHHHEECCCEEEECCCCCCCHHHHHHHHHHCCCCEEECCEEEEEEECCCCEEEEEC
QQPKAK
CCCCCC
>Mature Secondary Structure 
AKRIIGTTPKEDGFRMPGEFEAQDQIFMIWPERPDNWRDGAKPVQIAFTNVAKAISRFT
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHCC
PVTMLVSQSQYQNARYQLPADVRVLEVSNNDSWVRDCGPSFVINDKGELRANDWTFNAWG
CCEEEEECHHHCCCCEECCCCEEEEEECCCCCCHHHCCCCEEECCCCCEEECCEEEECCC
GLVDGLYFPWDQDDLVAQKVCELERVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEG
HHHCCEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCEEECCCCCEEEEEEHHHHCC
RNPHMSKEDIENKLKEHLNAEKILWLGDGIDPEETNGHVDDVACFVAPGEVACIYTEDEK
CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCC
SPFYEAAQDAYKRLNQMTDAKGRQLKVHKLTCPAKNVTIKKQFRIDTVEGTMPREDGDIC
CCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCEE
IASYMNFLITNKGVIVPQYGDENDALALKQVQEMFPDREIVGVNTVEVVYGGGNIHCITQ
HHHHHHHHEECCCEEEECCCCCCCHHHHHHHHHHCCCCEEECCEEEEEEECCCCEEEEEC
QQPKAK
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11337471