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The map label for this gene is rimM

Identifier: 15673547

GI number: 15673547

Start: 1607127

End: 1607642

Strand: Reverse

Name: rimM

Synonym: L6876

Alternate gene names: 15673547

Gene position: 1607642-1607127 (Counterclockwise)

Preceding gene: 15673548

Following gene: 30024050

Centisome position: 67.96

GC content: 33.72

Gene sequence:

>516_bases
ATGGAAAAATTTTACAAGGTAGGAACAATTGTTAATACACAAGGACTTCAAGGAGAGGTTCGCGTGATGCCATCGACAGA
TTTTGCTCAAGAACGCTTCTCAAAAGGTTCAGTTTTGGCACTTTTCGATGATAAGGATAATTATATTCAAGATTTAAAGG
TGAAATCTGGTCGCCCACAAAAGAATTTTTATGTCGTTAAATTTGAAGGATTTTATCATATTAATGATGTTGAAAAGTAT
AAGGGATATATTGTCAAAATTGCAGAAGAAAACCAAGAGGATTTAGATGATGGAGAATTTTACTATCATGAAATCATTGG
CAGTGATGTTTATGAAAATGATATCCTAATTGGTCAAATTTCTGAAATACTTCAACCAGGGGCTAATGATGTTTGGGTTG
TTAAACGTAAAGGAAAACGTGATTTATTATTGCCTTATATTCCGCCAGTTATTTTAAACGTAGATGTGAATCAACACCGA
GTGGACGTATCTATTATGGAAGGATTGGATGACTAG

Upstream 100 bases:

>100_bases
AATTTTTTTCATTCAAGGAAAAGATAGCTTTTCTTGAATAATAGACTTAAAAAATAGTTTTATTTAAATCAGGACTTATT
AGGTATGGTATAATTGTAGA

Downstream 100 bases:

>100_bases
AAATATGAGAATTGATATTTTAAGTATCTTTCCGGAAATGTTTGGCCCACTTAATCAGTCAATCGTAGGTAAAGCTCAAG
ATAAAGGTATTTTGGAGCTA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MEKFYKVGTIVNTQGLQGEVRVMPSTDFAQERFSKGSVLALFDDKDNYIQDLKVKSGRPQKNFYVVKFEGFYHINDVEKY
KGYIVKIAEENQEDLDDGEFYYHEIIGSDVYENDILIGQISEILQPGANDVWVVKRKGKRDLLLPYIPPVILNVDVNQHR
VDVSIMEGLDD

Sequences:

>Translated_171_residues
MEKFYKVGTIVNTQGLQGEVRVMPSTDFAQERFSKGSVLALFDDKDNYIQDLKVKSGRPQKNFYVVKFEGFYHINDVEKY
KGYIVKIAEENQEDLDDGEFYYHEIIGSDVYENDILIGQISEILQPGANDVWVVKRKGKRDLLLPYIPPVILNVDVNQHR
VDVSIMEGLDD
>Mature_171_residues
MEKFYKVGTIVNTQGLQGEVRVMPSTDFAQERFSKGSVLALFDDKDNYIQDLKVKSGRPQKNFYVVKFEGFYHINDVEKY
KGYIVKIAEENQEDLDDGEFYYHEIIGSDVYENDILIGQISEILQPGANDVWVVKRKGKRDLLLPYIPPVILNVDVNQHR
VDVSIMEGLDD

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_LACLA (Q9CFB6)

Other databases:

- EMBL:   AE005176
- PIR:   E86820
- RefSeq:   NP_267721.1
- ProteinModelPortal:   Q9CFB6
- SMR:   Q9CFB6
- GeneID:   1115225
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L6876
- NMPDR:   fig|272623.1.peg.1607
- HOGENOM:   HBG703775
- OMA:   NDVYWIK
- ProtClustDB:   PRK00122
- BioCyc:   LLAC272623:L6876-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19713; Mature: 19713

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKFYKVGTIVNTQGLQGEVRVMPSTDFAQERFSKGSVLALFDDKDNYIQDLKVKSGRPQ
CCCEEEECEEEECCCCCCEEEEECCCCHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCC
KNFYVVKFEGFYHINDVEKYKGYIVKIAEENQEDLDDGEFYYHEIIGSDVYENDILIGQI
CCEEEEEEECEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEEHHCCCCCCCCEEEEEH
SEILQPGANDVWVVKRKGKRDLLLPYIPPVILNVDVNQHRVDVSIMEGLDD
HHHHCCCCCCEEEEEECCCCCEECCCCCEEEEEECCCCEEEEEEEECCCCC
>Mature Secondary Structure
MEKFYKVGTIVNTQGLQGEVRVMPSTDFAQERFSKGSVLALFDDKDNYIQDLKVKSGRPQ
CCCEEEECEEEECCCCCCEEEEECCCCHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCC
KNFYVVKFEGFYHINDVEKYKGYIVKIAEENQEDLDDGEFYYHEIIGSDVYENDILIGQI
CCEEEEEEECEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEEHHCCCCCCCCEEEEEH
SEILQPGANDVWVVKRKGKRDLLLPYIPPVILNVDVNQHRVDVSIMEGLDD
HHHHCCCCCCEEEEEECCCCCEECCCCCEEEEEECCCCEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471