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The map label for this gene is ynbD

Identifier: 15673263

GI number: 15673263

Start: 1311739

End: 1312344

Strand: Reverse

Name: ynbD

Synonym: L111484

Alternate gene names: 15673263

Gene position: 1312344-1311739 (Counterclockwise)

Preceding gene: 15673264

Following gene: 15673262

Centisome position: 55.48

GC content: 38.78

Gene sequence:

>606_bases
ATGGAAAAAACACTTATAATCGCAACAAGAAATTCAGGAAAAACAAAAGAATTTAAGAAATTATTTGCTGATTTCGGTTA
TGAAATCAAAGATTTAACAGATTATCCAGAACTTTCTGAAATTGAAGAAACTGGAACTACTTTTGAAGAAAATGCTCGTT
TAAAAGCAGAACAAATCGCTGAAATTACTGGGCAAGTAGTTATTGGCGATGATTCAGGACTTTGTGTTGATGTCCTTGGT
GGTTTGCCTGGCATTTGGTCGCATCGTTTCTCAGCTCCAGATCCTACTGATGAGAAAAATATCGCAAAACTTTTGCACGA
ACTGGCTCCAACGGCAATTACTCCAGAACGTAGAAGCGCACATTTTCATACTACGCTTGTGGCGGCAAAACCAGGCCGTG
AGAGTTTAGTTGTAGAAGCAGATTGGGATGGCTATATTGCTCTCGCTCCTAAAGGAGAAAATGGTTTTGGCTATGATCCT
ATTTTCATGGTCGATGCCTTTAGAACAGCCGCAGAATTATCAGAAAAAGAAAAAAATCAAGTCTCTCATCGTGGACAAGC
CTTGAGAAAATTAATGGCTGAACTTCCTGAGTGGCTTTACAAATAA

Upstream 100 bases:

>100_bases
GGGCGTTAATTCATTTCGAGAAATTGCAGAAAAATGGTTAAACATCGGACAACTTCAGATTGAACATACTGAAATAGAGA
ATTTCAATAAGGAAAAATAA

Downstream 100 bases:

>100_bases
GTTTAAATAAATTAACATAAATATAATTATGTAAAAGAGGGACGCTTATGTTTGTAGTAATGTCTGATTCACATTATGAC
CGCGATGTGGTTCAATCCAT

Product: hypothetical protein

Products: NA

Alternate protein names: Nucleoside triphosphate phosphohydrolase; NTPase

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MEKTLIIATRNSGKTKEFKKLFADFGYEIKDLTDYPELSEIEETGTTFEENARLKAEQIAEITGQVVIGDDSGLCVDVLG
GLPGIWSHRFSAPDPTDEKNIAKLLHELAPTAITPERRSAHFHTTLVAAKPGRESLVVEADWDGYIALAPKGENGFGYDP
IFMVDAFRTAAELSEKEKNQVSHRGQALRKLMAELPEWLYK

Sequences:

>Translated_201_residues
MEKTLIIATRNSGKTKEFKKLFADFGYEIKDLTDYPELSEIEETGTTFEENARLKAEQIAEITGQVVIGDDSGLCVDVLG
GLPGIWSHRFSAPDPTDEKNIAKLLHELAPTAITPERRSAHFHTTLVAAKPGRESLVVEADWDGYIALAPKGENGFGYDP
IFMVDAFRTAAELSEKEKNQVSHRGQALRKLMAELPEWLYK
>Mature_201_residues
MEKTLIIATRNSGKTKEFKKLFADFGYEIKDLTDYPELSEIEETGTTFEENARLKAEQIAEITGQVVIGDDSGLCVDVLG
GLPGIWSHRFSAPDPTDEKNIAKLLHELAPTAITPERRSAHFHTTLVAAKPGRESLVVEADWDGYIALAPKGENGFGYDP
IFMVDAFRTAAELSEKEKNQVSHRGQALRKLMAELPEWLYK

Specific function: Hydrolyzes non-standard nucleotides such as XTP and dITP/ITP. Might exclude non-standard purines from DNA precursor pool, preventing thus incorporation into DNA and avoiding chromosomal lesions

COG id: COG0127

COG function: function code F; Xanthosine triphosphate pyrophosphatase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAM1 NTPase family

Homologues:

Organism=Escherichia coli, GI1789324, Length=198, Percent_Identity=46.969696969697, Blast_Score=162, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NTPA_LACLA (Q9CG29)

Other databases:

- EMBL:   AE005176
- PIR:   A86785
- RefSeq:   NP_267437.1
- ProteinModelPortal:   Q9CG29
- SMR:   Q9CG29
- GeneID:   1114930
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L111484
- NMPDR:   fig|272623.1.peg.1316
- HOGENOM:   HBG697237
- OMA:   TGVTFAE
- ProtClustDB:   CLSK2567737
- BioCyc:   LLAC272623:L111484-MONOMER
- BRENDA:   3.6.1.15
- HAMAP:   MF_01405
- InterPro:   IPR002637
- InterPro:   IPR020922
- PANTHER:   PTHR11067
- TIGRFAMs:   TIGR00042

Pfam domain/function: PF01725 Ham1p_like

EC number: =3.6.1.15

Molecular weight: Translated: 22380; Mature: 22380

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKTLIIATRNSGKTKEFKKLFADFGYEIKDLTDYPELSEIEETGTTFEENARLKAEQIA
CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHCCCCCHHHHH
EITGQVVIGDDSGLCVDVLGGLPGIWSHRFSAPDPTDEKNIAKLLHELAPTAITPERRSA
HHHCCEEEECCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
HFHTTLVAAKPGRESLVVEADWDGYIALAPKGENGFGYDPIFMVDAFRTAAELSEKEKNQ
EEEEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VSHRGQALRKLMAELPEWLYK
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEKTLIIATRNSGKTKEFKKLFADFGYEIKDLTDYPELSEIEETGTTFEENARLKAEQIA
CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHCCCCCHHHHH
EITGQVVIGDDSGLCVDVLGGLPGIWSHRFSAPDPTDEKNIAKLLHELAPTAITPERRSA
HHHCCEEEECCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
HFHTTLVAAKPGRESLVVEADWDGYIALAPKGENGFGYDPIFMVDAFRTAAELSEKEKNQ
EEEEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VSHRGQALRKLMAELPEWLYK
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471