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The map label for this gene is ylgC

Identifier: 15673131

GI number: 15673131

Start: 1162226

End: 1162735

Strand: Reverse

Name: ylgC

Synonym: L161988

Alternate gene names: 15673131

Gene position: 1162735-1162226 (Counterclockwise)

Preceding gene: 15673157

Following gene: 15673130

Centisome position: 49.15

GC content: 33.14

Gene sequence:

>510_bases
ATGAATCATATTGCTCTTTTTGAACCTCGTATTCATTTCAATACAGGAAATATCGCCCGCACTTGTGCGGCTACTAATAC
CGTTTTACATTTAATTGAACCCTTTGGTTTTGAAATTTCTGATAAGCATCTTAAACGTGCTGGTTTAGACTATTGGGATA
AGGTAAATATTGTCTATCATAAAAATTTAGATGATTTTATGAATTCAATTAATGACGGAGGACAACTCTATTTGGTCAGT
AAATTTGCTGAGCATGTTTATTCTGACGTTGATTACTCCGATGATGAAAAAGATCACTACTTCTTGTTTGGCCGTGAAGA
TACAGGTTTACCTGAAGAATTTATGCATGAACATCGTGATGAATGCATTCGTATTCCAATGAATGACGAACATGTTCGGT
CATTAAATTTATCAAATTGTGCTTGTATGATTGTCTATGAAGCTTTAAAACAACAAGATTTCCGTGGACTAGAACTCGTT
CATACTTATGAAAAAGATAAGTTAAAATAA

Upstream 100 bases:

>100_bases
CTTCTGCTTATGGTAAAATGTTCTTAAATAATTGCATTTTACTCATAGATTTTTTGATAAGGCTGTCAGTAAAATTTTTG
TTATTAAGAAAGTGTATTTC

Downstream 100 bases:

>100_bases
TTGTATTTATAAATAGACAAACGCCCTATTACTGACAGGCGTTTTTTTATTGTTCTTTTATTTAGCGGGTGCTATAATGA
AGGCAAATAAGAAGGAGATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKNLDDFMNSINDGGQLYLVS
KFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRGLELV
HTYEKDKLK

Sequences:

>Translated_169_residues
MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKNLDDFMNSINDGGQLYLVS
KFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRGLELV
HTYEKDKLK
>Mature_169_residues
MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKNLDDFMNSINDGGQLYLVS
KFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRGLELV
HTYEKDKLK

Specific function: Could methylate the ribose at the nucleotide 34 wobble position in tRNA [H]

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family. TrmL subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790034, Length=160, Percent_Identity=40, Blast_Score=110, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016914
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 19843; Mature: 19843

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYH
CCCEEEECCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEEEEE
KNLDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRD
CCHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
ECIRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRGLELVHTYEKDKLK
HEEECCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYH
CCCEEEECCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEEEEE
KNLDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRD
CCHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
ECIRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRGLELVHTYEKDKLK
HEEECCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA