Click here to switch to the map view.

The map label for this gene is yjaD

Identifier: 15672863

GI number: 15672863

Start: 903327

End: 903860

Strand: Reverse

Name: yjaD

Synonym: L103086

Alternate gene names: NA

Gene position: 903860-903327 (Counterclockwise)

Preceding gene: 15672927

Following gene: 15672833

Centisome position: 38.21

GC content: 32.21

Gene sequence:

>534_bases
ATGTCCAATGACAGCAGAAAAGATCGTACAAAACTTCAATTACGAGATGCCATGATTCAACTTTTAGGCGAGAAATCTTT
TGACCAAATTTCAACGACTGAACTTGTGAAATTAGCTAAAGTTAGTCGTAGTAGTTTTTATACTCATTATCAAGATAAAT
ATGACATGATTGAAGCCTATCAACGTCGACTTTTTGAGACTATTCAATATGTATTTGAAAAAAATAACGGAAATATTCAT
GCAACGATGCTTGAAACTTTTGAATTTCTAAAAGGAAATCAAATATATGCCGCTCTTCTTTCGGAAAATGGTAGCAAAGA
AATCCACCAGTTTATGTTGCAAAAACTCAAAGAACTTATTCAAAGTTCCTTTTTCCCTCAATCTAAACATCTTAAATTAG
GAAAATTAGGGGAAATTTATGCGACAACCTACTATGCTAATGCTATTTTTGGAACTACTCAATCGTGGATTCGTCGAAAA
CAAAAGGAAACACCTACTCAAATTGCTAATCTATTAGTTGAGCTCATAAATTAA

Upstream 100 bases:

>100_bases
TAGAAAATTTGACAATTATTATCCATTCAGTTTTGGACAGATTTTTAAATCTGTCTAAATAAAGCACTTACATTCTAAAA
AGGACGGAGGTTCCCCTATA

Downstream 100 bases:

>100_bases
AAAAAAAACGGTTCTTTTAGAAGAATCGTTTTTTATCATTCTATTTGGAAAATAACAGCCATTAACAGGTGTTAATCATG
TTGCTGAACTTCCAAAATCA

Product: transcription regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; TetR/AcrR Family Transcriptional Regulator; TetR Family Regulatory Protein; Transcription Regulator; TetR Family HTH Transcriptional Regulator

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MSNDSRKDRTKLQLRDAMIQLLGEKSFDQISTTELVKLAKVSRSSFYTHYQDKYDMIEAYQRRLFETIQYVFEKNNGNIH
ATMLETFEFLKGNQIYAALLSENGSKEIHQFMLQKLKELIQSSFFPQSKHLKLGKLGEIYATTYYANAIFGTTQSWIRRK
QKETPTQIANLLVELIN

Sequences:

>Translated_177_residues
MSNDSRKDRTKLQLRDAMIQLLGEKSFDQISTTELVKLAKVSRSSFYTHYQDKYDMIEAYQRRLFETIQYVFEKNNGNIH
ATMLETFEFLKGNQIYAALLSENGSKEIHQFMLQKLKELIQSSFFPQSKHLKLGKLGEIYATTYYANAIFGTTQSWIRRK
QKETPTQIANLLVELIN
>Mature_176_residues
SNDSRKDRTKLQLRDAMIQLLGEKSFDQISTTELVKLAKVSRSSFYTHYQDKYDMIEAYQRRLFETIQYVFEKNNGNIHA
TMLETFEFLKGNQIYAALLSENGSKEIHQFMLQKLKELIQSSFFPQSKHLKLGKLGEIYATTYYANAIFGTTQSWIRRKQ
KETPTQIANLLVELIN

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20721; Mature: 20590

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNDSRKDRTKLQLRDAMIQLLGEKSFDQISTTELVKLAKVSRSSFYTHYQDKYDMIEAY
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRRLFETIQYVFEKNNGNIHATMLETFEFLKGNQIYAALLSENGSKEIHQFMLQKLKELI
HHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
QSSFFPQSKHLKLGKLGEIYATTYYANAIFGTTQSWIRRKQKETPTQIANLLVELIN
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHC
>Mature Secondary Structure 
SNDSRKDRTKLQLRDAMIQLLGEKSFDQISTTELVKLAKVSRSSFYTHYQDKYDMIEAY
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRRLFETIQYVFEKNNGNIHATMLETFEFLKGNQIYAALLSENGSKEIHQFMLQKLKELI
HHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
QSSFFPQSKHLKLGKLGEIYATTYYANAIFGTTQSWIRRKQKETPTQIANLLVELIN
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA