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The map label for this gene is yecA

Identifier: 15672397

GI number: 15672397

Start: 419728

End: 420459

Strand: Direct

Name: yecA

Synonym: L19721

Alternate gene names: 15672397

Gene position: 419728-420459 (Clockwise)

Preceding gene: 15672396

Following gene: 30023989

Centisome position: 17.74

GC content: 33.33

Gene sequence:

>732_bases
ATGATGAGTTTTTTTGGAAATGTTGACTTTCAAAAATTAACCTACACGGAAAGAACTTGTTATAGTTATTTACGAGATAA
TGTTGATAAAATTCCTTATATGCGAGTCCGTGATATTGCTCTGGAAGCACATGTTGGAACTTCTAGCGTCATGCGCCTCA
TTCATAAAATGGGTTATGATTCATATACAGATTTTAAAGAGTACATTATTGATAAAAAAGAATTGGAAAAAGGAAGCTCA
AATACGGCAATTCCTTTTTCACTAGATATTTTCTCTAACGATATTGAACAACGTTTGGATAATCTGGCACATCGAGTCAT
TGAAAGTGACAATATCATTTTTACAGGAGTAGGTTCCAGCGGTTTAATTTGCGATTATGCAGCTAGAAGATTAGCGGGAG
TTGGAATTAATACCTTTTCATTTAGTGATGTGACTTATCCAATTGCTTCAAAATTACCAAATACAACCAACACTTTAGTA
ATTGCTTTATCCATCTCTGGGGAAACGAATGAAATCATTGAAGTACTGACCAGTCTGCGCTCTAATAAAGATGTCTATAT
TTCATGTATCACACCAAAATTGAATTCAAGTATTGCTGAACTGAGCGATTTTGTCCTTACTTATCGAATTAATGAACACC
GAATCAATACGCATTATGATTTGACGAGTCAATTACCAACAGTTTATTTGACTGAGCGTTTAACAGATTTGGTTTATCAA
TTATCAAATTAA

Upstream 100 bases:

>100_bases
AAACAAATAATATAGCTCCTAGCTTATTAGAAAAGCAAGATTAAAAGTTGCGGAGACGCAACTTTTTTCTAACCAAAAAG
TTTAAAGAAGAAAGGAGAGA

Downstream 100 bases:

>100_bases
AAAGCCAAATTGGCTTTTTTATCTGCTCAGCCGTTCCTAATCATTTGATGGATAAAACAAAAAAAGTTAAATTGAGATAA
CAAATATAATTTGAAAGGCT

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MMSFFGNVDFQKLTYTERTCYSYLRDNVDKIPYMRVRDIALEAHVGTSSVMRLIHKMGYDSYTDFKEYIIDKKELEKGSS
NTAIPFSLDIFSNDIEQRLDNLAHRVIESDNIIFTGVGSSGLICDYAARRLAGVGINTFSFSDVTYPIASKLPNTTNTLV
IALSISGETNEIIEVLTSLRSNKDVYISCITPKLNSSIAELSDFVLTYRINEHRINTHYDLTSQLPTVYLTERLTDLVYQ
LSN

Sequences:

>Translated_243_residues
MMSFFGNVDFQKLTYTERTCYSYLRDNVDKIPYMRVRDIALEAHVGTSSVMRLIHKMGYDSYTDFKEYIIDKKELEKGSS
NTAIPFSLDIFSNDIEQRLDNLAHRVIESDNIIFTGVGSSGLICDYAARRLAGVGINTFSFSDVTYPIASKLPNTTNTLV
IALSISGETNEIIEVLTSLRSNKDVYISCITPKLNSSIAELSDFVLTYRINEHRINTHYDLTSQLPTVYLTERLTDLVYQ
LSN
>Mature_243_residues
MMSFFGNVDFQKLTYTERTCYSYLRDNVDKIPYMRVRDIALEAHVGTSSVMRLIHKMGYDSYTDFKEYIIDKKELEKGSS
NTAIPFSLDIFSNDIEQRLDNLAHRVIESDNIIFTGVGSSGLICDYAARRLAGVGINTFSFSDVTYPIASKLPNTTNTLV
IALSISGETNEIIEVLTSLRSNKDVYISCITPKLNSSIAELSDFVLTYRINEHRINTHYDLTSQLPTVYLTERLTDLVYQ
LSN

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 27567; Mature: 27567

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS00356 HTH_LACI_1 ; PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSFFGNVDFQKLTYTERTCYSYLRDNVDKIPYMRVRDIALEAHVGTSSVMRLIHKMGYD
CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHEEEEECCCHHHHHHHHHHCCCC
SYTDFKEYIIDKKELEKGSSNTAIPFSLDIFSNDIEQRLDNLAHRVIESDNIIFTGVGSS
CHHHHHHHHCCHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
GLICDYAARRLAGVGINTFSFSDVTYPIASKLPNTTNTLVIALSISGETNEIIEVLTSLR
CCCHHHHHHHHHCCCCCEEECCCCCCHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
SNKDVYISCITPKLNSSIAELSDFVLTYRINEHRINTHYDLTSQLPTVYLTERLTDLVYQ
CCCCEEEEEECCCCCHHHHHHHHHHEEEEECCCCCCCEECHHHCCCHHHHHHHHHHHHHH
LSN
HCC
>Mature Secondary Structure
MMSFFGNVDFQKLTYTERTCYSYLRDNVDKIPYMRVRDIALEAHVGTSSVMRLIHKMGYD
CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHEEEEECCCHHHHHHHHHHCCCC
SYTDFKEYIIDKKELEKGSSNTAIPFSLDIFSNDIEQRLDNLAHRVIESDNIIFTGVGSS
CHHHHHHHHCCHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
GLICDYAARRLAGVGINTFSFSDVTYPIASKLPNTTNTLVIALSISGETNEIIEVLTSLR
CCCHHHHHHHHHCCCCCEEECCCCCCHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
SNKDVYISCITPKLNSSIAELSDFVLTYRINEHRINTHYDLTSQLPTVYLTERLTDLVYQ
CCCCEEEEEECCCCCHHHHHHHHHHEEEEECCCCCCCEECHHHCCCHHHHHHHHHHHHHH
LSN
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8177218; 11792842 [H]