Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is tyrS
Identifier: 15672367
GI number: 15672367
Start: 390031
End: 391290
Strand: Reverse
Name: tyrS
Synonym: L0359
Alternate gene names: 15672367
Gene position: 391290-390031 (Counterclockwise)
Preceding gene: 15672369
Following gene: 15672366
Centisome position: 16.54
GC content: 36.43
Gene sequence:
>1260_bases ATGAACATTTTTGACGAACTTAAAGCACGTGGTTTGGTTTTCCAAACAACGGACGAAGCTGCGCTTTCTAAAGCGCTGAC GGAGGACATGGTTTCCTATTATGTAGGATATGACCCTACCGCTGATTCCCTTCATTTAGGTAATCTTGTACTAATTTTGA CAATGAAACGTCTACAAATGGCTGGACATAAACCTTATGCGCTTGTTGGTGGTGCAACTGGTTTGATTGGTGATCCTTCT TTCAAAGATTCAGAACGTTCACTTCAAACAAAAGACACTGTAACAAAATGGTCTGGAAAAATCCGTAGTCAGCTTGAGCG TTTCCTGGATTTTGAAAATGGTGAAAATAAGGCAGAAATGACCAATAACTACAACTGGTTTGAAAATCTGACTTTTATTG ATTTCCTCAGAGATGTGGGTAAACATTTCACCGTTAACTACATGATTTCTAAAGACTCTGTAAAATCACGGATGGAAAGT GGAATTTCTTATACAGAATTTGCTTACCAAATTATGCAAGGTTATGATTTCTACGAATTGAACCAATTGCACAATGTTAC TTTACAACTTGGTGGTTCTGATCAATGGGGAAATATGACTGCTGGAACAGAGCTTTTACGTCGTAAAGCGAACAAGCAAG GTCATGTTATTACTATTCCATTAATTACAGATTCAACTGGTAAAAAATTCGGTAAATCAGAAGGAAATGCAATTTGGCTT GATGCTGATAAAACATCTCCTTATGAAATGTACCAATTTTGGCTTAATGTTGATGATGCAGATGCTGTAAAAATGTTGAA AATTTTCACCTTCCTTTCATTAGAAGAGATTGCTGAAATTGAAGAACAATTTGAAGCAGCTCGTCATGAGCGTTTGGCCC AAAAAGTTTTGGCTCGTGAAGTTGTCAGCTTAGTTCACGGAAAAGCAGCTTATGAACAAGCAGTTAAAACATCAGAAATC TTATTTGGCGGCGGAGATTTGCGTCAATTAGATGCTAAATCAATCTTAACTGGTCTTAAAGCAGCTCCACAACATCAAGT TACTGATGATGAAGATTTAACTTTAGTTGAACTTTTAATCTCTGCTGGAATAGCTCCTTCAAAAAGACAAGCTCGTGAAG ATATTACAAATGGTGCGATTTATATCAATGGTGAACGTGTTCAAGCACTTGATTATGTTATTACAGATTCAGATAAAATT GAAAATCGTTTAACTGTCATTCGTCGTGGGAAAAAGAAAAACTTCGTTTTGACTTATTAA
Upstream 100 bases:
>100_bases AATTTTTTTTATTAATTTGTTATAATGTAAAACAGTGCTGTTAATTTTTTTACTTTTTATCCAAAGTGGACAGCTCAATC ATTATAGAAAGGATTTTTTT
Downstream 100 bases:
>100_bases TAAAACAAAAATTCTGTTCTAAATGGGACAGATTTTTTTTATTAAAAAATTTGAGCATTGCTCTTTCTTTTAGGCCACAA TATGTTATAATAACTGTACT
Product: tyrosyl-tRNA synthetase
Products: NA
Alternate protein names: Tyrosine--tRNA ligase; TyrRS
Number of amino acids: Translated: 419; Mature: 419
Protein sequence:
>419_residues MNIFDELKARGLVFQTTDEAALSKALTEDMVSYYVGYDPTADSLHLGNLVLILTMKRLQMAGHKPYALVGGATGLIGDPS FKDSERSLQTKDTVTKWSGKIRSQLERFLDFENGENKAEMTNNYNWFENLTFIDFLRDVGKHFTVNYMISKDSVKSRMES GISYTEFAYQIMQGYDFYELNQLHNVTLQLGGSDQWGNMTAGTELLRRKANKQGHVITIPLITDSTGKKFGKSEGNAIWL DADKTSPYEMYQFWLNVDDADAVKMLKIFTFLSLEEIAEIEEQFEAARHERLAQKVLAREVVSLVHGKAAYEQAVKTSEI LFGGGDLRQLDAKSILTGLKAAPQHQVTDDEDLTLVELLISAGIAPSKRQAREDITNGAIYINGERVQALDYVITDSDKI ENRLTVIRRGKKKNFVLTY
Sequences:
>Translated_419_residues MNIFDELKARGLVFQTTDEAALSKALTEDMVSYYVGYDPTADSLHLGNLVLILTMKRLQMAGHKPYALVGGATGLIGDPS FKDSERSLQTKDTVTKWSGKIRSQLERFLDFENGENKAEMTNNYNWFENLTFIDFLRDVGKHFTVNYMISKDSVKSRMES GISYTEFAYQIMQGYDFYELNQLHNVTLQLGGSDQWGNMTAGTELLRRKANKQGHVITIPLITDSTGKKFGKSEGNAIWL DADKTSPYEMYQFWLNVDDADAVKMLKIFTFLSLEEIAEIEEQFEAARHERLAQKVLAREVVSLVHGKAAYEQAVKTSEI LFGGGDLRQLDAKSILTGLKAAPQHQVTDDEDLTLVELLISAGIAPSKRQAREDITNGAIYINGERVQALDYVITDSDKI ENRLTVIRRGKKKNFVLTY >Mature_419_residues MNIFDELKARGLVFQTTDEAALSKALTEDMVSYYVGYDPTADSLHLGNLVLILTMKRLQMAGHKPYALVGGATGLIGDPS FKDSERSLQTKDTVTKWSGKIRSQLERFLDFENGENKAEMTNNYNWFENLTFIDFLRDVGKHFTVNYMISKDSVKSRMES GISYTEFAYQIMQGYDFYELNQLHNVTLQLGGSDQWGNMTAGTELLRRKANKQGHVITIPLITDSTGKKFGKSEGNAIWL DADKTSPYEMYQFWLNVDDADAVKMLKIFTFLSLEEIAEIEEQFEAARHERLAQKVLAREVVSLVHGKAAYEQAVKTSEI LFGGGDLRQLDAKSILTGLKAAPQHQVTDDEDLTLVELLISAGIAPSKRQAREDITNGAIYINGERVQALDYVITDSDKI ENRLTVIRRGKKKNFVLTY
Specific function: Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction:tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
COG id: COG0162
COG function: function code J; Tyrosyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S4 RNA-binding domain
Homologues:
Organism=Homo sapiens, GI94681057, Length=436, Percent_Identity=35.3211009174312, Blast_Score=239, Evalue=4e-63, Organism=Escherichia coli, GI1787925, Length=429, Percent_Identity=48.2517482517483, Blast_Score=421, Evalue=1e-119, Organism=Caenorhabditis elegans, GI25145802, Length=420, Percent_Identity=34.2857142857143, Blast_Score=230, Evalue=1e-60, Organism=Caenorhabditis elegans, GI25145805, Length=324, Percent_Identity=32.4074074074074, Blast_Score=167, Evalue=9e-42, Organism=Saccharomyces cerevisiae, GI6325160, Length=440, Percent_Identity=37.5, Blast_Score=289, Evalue=6e-79, Organism=Drosophila melanogaster, GI20130383, Length=437, Percent_Identity=38.9016018306636, Blast_Score=306, Evalue=2e-83,
Paralogues:
None
Copy number: 892 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYY_LACLA (Q9CIH5)
Other databases:
- EMBL: AE005176 - PIR: A86673 - RefSeq: NP_266541.1 - ProteinModelPortal: Q9CIH5 - SMR: Q9CIH5 - PhosSite: Q9CIH5 - GeneID: 1113996 - GenomeReviews: AE005176_GR - KEGG: lla:L0359 - NMPDR: fig|272623.1.peg.393 - HOGENOM: HBG288125 - OMA: TFYIGFD - ProtClustDB: PRK05912 - BioCyc: LLAC272623:L0359-MONOMER - BRENDA: 6.1.1.1 - GO: GO:0005737 - HAMAP: MF_02006 - InterPro: IPR001412 - InterPro: IPR002305 - InterPro: IPR014729 - InterPro: IPR002942 - InterPro: IPR002307 - Gene3D: G3DSA:3.40.50.620 - PANTHER: PTHR11766 - PRINTS: PR01040 - SMART: SM00363 - TIGRFAMs: TIGR00234
Pfam domain/function: PF01479 S4; PF00579 tRNA-synt_1b
EC number: =6.1.1.1
Molecular weight: Translated: 47251; Mature: 47251
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: PS00178 AA_TRNA_LIGASE_I; PS50889 S4
Important sites: BINDING 34-34 BINDING 169-169 BINDING 173-173 BINDING 232-232
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIFDELKARGLVFQTTDEAALSKALTEDMVSYYVGYDPTADSLHLGNLVLILTMKRLQM CCHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHH AGHKPYALVGGATGLIGDPSFKDSERSLQTKDTVTKWSGKIRSQLERFLDFENGENKAEM CCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH TNNYNWFENLTFIDFLRDVGKHFTVNYMISKDSVKSRMESGISYTEFAYQIMQGYDFYEL CCCCCHHHCCHHHHHHHHHCCCEEEEEEEEHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH NQLHNVTLQLGGSDQWGNMTAGTELLRRKANKQGHVITIPLITDSTGKKFGKSEGNAIWL HHHCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCEEEE DADKTSPYEMYQFWLNVDDADAVKMLKIFTFLSLEEIAEIEEQFEAARHERLAQKVLARE ECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVSLVHGKAAYEQAVKTSEILFGGGDLRQLDAKSILTGLKAAPQHQVTDDEDLTLVELLI HHHHHHCHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH SAGIAPSKRQAREDITNGAIYINGERVQALDYVITDSDKIENRLTVIRRGKKKNFVLTY HCCCCCCHHHHHHHHCCCEEEEECCEEEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEC >Mature Secondary Structure MNIFDELKARGLVFQTTDEAALSKALTEDMVSYYVGYDPTADSLHLGNLVLILTMKRLQM CCHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHH AGHKPYALVGGATGLIGDPSFKDSERSLQTKDTVTKWSGKIRSQLERFLDFENGENKAEM CCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH TNNYNWFENLTFIDFLRDVGKHFTVNYMISKDSVKSRMESGISYTEFAYQIMQGYDFYEL CCCCCHHHCCHHHHHHHHHCCCEEEEEEEEHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH NQLHNVTLQLGGSDQWGNMTAGTELLRRKANKQGHVITIPLITDSTGKKFGKSEGNAIWL HHHCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCEEEE DADKTSPYEMYQFWLNVDDADAVKMLKIFTFLSLEEIAEIEEQFEAARHERLAQKVLARE ECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVSLVHGKAAYEQAVKTSEILFGGGDLRQLDAKSILTGLKAAPQHQVTDDEDLTLVELLI HHHHHHCHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH SAGIAPSKRQAREDITNGAIYINGERVQALDYVITDSDKIENRLTVIRRGKKKNFVLTY HCCCCCCHHHHHHHHCCCEEEEECCEEEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11337471