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The map label for this gene is ydiC

Identifier: 15672362

GI number: 15672362

Start: 384568

End: 385971

Strand: Direct

Name: ydiC

Synonym: L184516

Alternate gene names: 15672362

Gene position: 384568-385971 (Clockwise)

Preceding gene: 15672361

Following gene: 15672363

Centisome position: 16.26

GC content: 37.18

Gene sequence:

>1404_bases
ATGTCAGACAGAATAAAGGCTTTAATTGCCTTAGGGATATTTACATTTATGTCAACATTGGATGGTTCAATTGTTAATAT
TGCTCTACCAACAATGTCAAAGGAGCTTCATGTCTCTACTTCTCAAATCACTTGGGTGGTGACAATCTATTTAATTGTAA
TTTCAGCGATTGTACTGATTTTTGGCCGTTTAGGCGATTTAATAGGTAAATCACGAATTGCCCGCATTGGTTGGGGAATT
TTTATTTTAGGCTCTGCACTTGCTGGGTTAAATTTTGGTTGGGGCTTAGGTTTTCTTCTTTTTGCACGGGTGATTCAGGC
TATTGGGGCGTCAATGTTTATGGCAACCGGTTTTGGAATTATTTCAGAAATTTTCCCACCTGAAAGTCGAGCAAGAGCAC
TTTCCATTTCAGCAATGTTTGTATCGGTTGGCTCAATCGCTGGACCTGCCCTTGGAGGACTGATTTTACAGGTCGCTTCA
TGGAATTATATCTTTTGGATAAATGTCCCTATCGGAATTTTAGCATGGATTTTTGGAAATCATGCTTTGCCAAAAGAAAA
AACCAGTGGAAAATGGTCGGATATTGATTTTAAAGGTGGAACATTAATGACTTCTGTTATTGTTTTGCTTTTCTTAGCTC
TTAATTTTGGGCAAGCTTTGGGTTGGACCAATCCATTAATTATTATTGGTGCATTGCTTGGCTTTATTCTCTTTGGAATA
TTTATTTTAACAGAGAAAAAGGTCGCTCAGCCTTTGCTTGATTTAGGAATTTTTAAATCAAAATTATTTTCAATGAGTAT
TATTATGGCTCTCTTTAATTTTACAGTAGCGATGTTCTCAAGTATTTTGTTACCATTCTACTTACAAGATTTTAGAAATT
ATGGGCCAGGCTTGGCAGGGATGATTATGATGGCTTATCCTGTTGCTATGCTGATTGCTAGCCCTTTAGCAGGTTCGGCA
GCAGATAAAATGGATAAAGAAATTGTTACTTTTGTAGGAATTTCAGGGATTGTTTTGTCACAGCTCGGCTATTTACTGAT
AAATCCGCATTCTGCTCCATGGCTAGTTGTTGTTATTCTTTTGATTCAAGGAATGTCTATGGGGATTTTCCAAAGCCCAA
ACAATGCTTTGATTATGGAAACTGTTGACCGTAAGTATTTAGGAATTGCTGGGTCAGTTAATTCTCTTGCCCGTAATATG
GCCTTTGTTTTAGGGACGTCTTTAGCAACATTGATTTTATTCACAGCGATGTCTAATCAGTTGGGTTATAAGGTAACAAC
TTATTTGCACAATCAACCAGATGTCTTTTTACACGGTTTCCACGTGGCCTTCTATTTTTCAACATTTCTTGTTTTAGTGA
CTTGGGTTCTTGGCTTATTCCGTTTGTTGGGACGTAAAAAGTAA

Upstream 100 bases:

>100_bases
TTATAAACTTAGGAAAAATTAATTGAGTTCATCAGTATAACAAGACTTATTAGGAATTTTATTTAAAGAAGGTGATACTC
AATTTATAGGAAAGGATTTT

Downstream 100 bases:

>100_bases
AATAAAAACAATCTAAATGATTGTTTTTTTACTGACAGAATTTCTGTCAGTAAAATGTTTACATGTGTAAATTTTCACGT
ACTAAATATATTGATAATTT

Product: efflux pump antibiotic resistance protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MSDRIKALIALGIFTFMSTLDGSIVNIALPTMSKELHVSTSQITWVVTIYLIVISAIVLIFGRLGDLIGKSRIARIGWGI
FILGSALAGLNFGWGLGFLLFARVIQAIGASMFMATGFGIISEIFPPESRARALSISAMFVSVGSIAGPALGGLILQVAS
WNYIFWINVPIGILAWIFGNHALPKEKTSGKWSDIDFKGGTLMTSVIVLLFLALNFGQALGWTNPLIIIGALLGFILFGI
FILTEKKVAQPLLDLGIFKSKLFSMSIIMALFNFTVAMFSSILLPFYLQDFRNYGPGLAGMIMMAYPVAMLIASPLAGSA
ADKMDKEIVTFVGISGIVLSQLGYLLINPHSAPWLVVVILLIQGMSMGIFQSPNNALIMETVDRKYLGIAGSVNSLARNM
AFVLGTSLATLILFTAMSNQLGYKVTTYLHNQPDVFLHGFHVAFYFSTFLVLVTWVLGLFRLLGRKK

Sequences:

>Translated_467_residues
MSDRIKALIALGIFTFMSTLDGSIVNIALPTMSKELHVSTSQITWVVTIYLIVISAIVLIFGRLGDLIGKSRIARIGWGI
FILGSALAGLNFGWGLGFLLFARVIQAIGASMFMATGFGIISEIFPPESRARALSISAMFVSVGSIAGPALGGLILQVAS
WNYIFWINVPIGILAWIFGNHALPKEKTSGKWSDIDFKGGTLMTSVIVLLFLALNFGQALGWTNPLIIIGALLGFILFGI
FILTEKKVAQPLLDLGIFKSKLFSMSIIMALFNFTVAMFSSILLPFYLQDFRNYGPGLAGMIMMAYPVAMLIASPLAGSA
ADKMDKEIVTFVGISGIVLSQLGYLLINPHSAPWLVVVILLIQGMSMGIFQSPNNALIMETVDRKYLGIAGSVNSLARNM
AFVLGTSLATLILFTAMSNQLGYKVTTYLHNQPDVFLHGFHVAFYFSTFLVLVTWVLGLFRLLGRKK
>Mature_466_residues
SDRIKALIALGIFTFMSTLDGSIVNIALPTMSKELHVSTSQITWVVTIYLIVISAIVLIFGRLGDLIGKSRIARIGWGIF
ILGSALAGLNFGWGLGFLLFARVIQAIGASMFMATGFGIISEIFPPESRARALSISAMFVSVGSIAGPALGGLILQVASW
NYIFWINVPIGILAWIFGNHALPKEKTSGKWSDIDFKGGTLMTSVIVLLFLALNFGQALGWTNPLIIIGALLGFILFGIF
ILTEKKVAQPLLDLGIFKSKLFSMSIIMALFNFTVAMFSSILLPFYLQDFRNYGPGLAGMIMMAYPVAMLIASPLAGSAA
DKMDKEIVTFVGISGIVLSQLGYLLINPHSAPWLVVVILLIQGMSMGIFQSPNNALIMETVDRKYLGIAGSVNSLARNMA
FVLGTSLATLILFTAMSNQLGYKVTTYLHNQPDVFLHGFHVAFYFSTFLVLVTWVLGLFRLLGRKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]

Homologues:

Organism=Escherichia coli, GI87081983, Length=424, Percent_Identity=30.4245283018868, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI1789042, Length=408, Percent_Identity=29.4117647058824, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI1788710, Length=403, Percent_Identity=29.2803970223325, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1790195, Length=425, Percent_Identity=27.0588235294118, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1788392, Length=398, Percent_Identity=24.8743718592965, Blast_Score=88, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6319770, Length=347, Percent_Identity=23.6311239193084, Blast_Score=77, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6324954, Length=385, Percent_Identity=22.0779220779221, Blast_Score=71, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6325455, Length=434, Percent_Identity=24.6543778801843, Blast_Score=68, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6322958, Length=264, Percent_Identity=26.8939393939394, Blast_Score=67, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6323735, Length=333, Percent_Identity=25.5255255255255, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR001411 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 50723; Mature: 50591

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRIKALIALGIFTFMSTLDGSIVNIALPTMSKELHVSTSQITWVVTIYLIVISAIVLI
CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHCCCHHHHHHHHHHHHHHHHHHHHH
FGRLGDLIGKSRIARIGWGIFILGSALAGLNFGWGLGFLLFARVIQAIGASMFMATGFGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISEIFPPESRARALSISAMFVSVGSIAGPALGGLILQVASWNYIFWINVPIGILAWIFGN
HHHHCCCCHHHHHEEHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCC
HALPKEKTSGKWSDIDFKGGTLMTSVIVLLFLALNFGQALGWTNPLIIIGALLGFILFGI
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
FILTEKKVAQPLLDLGIFKSKLFSMSIIMALFNFTVAMFSSILLPFYLQDFRNYGPGLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
MIMMAYPVAMLIASPLAGSAADKMDKEIVTFVGISGIVLSQLGYLLINPHSAPWLVVVIL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHH
LIQGMSMGIFQSPNNALIMETVDRKYLGIAGSVNSLARNMAFVLGTSLATLILFTAMSNQ
HHCCCCCCEEECCCCEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LGYKVTTYLHNQPDVFLHGFHVAFYFSTFLVLVTWVLGLFRLLGRKK
CCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SDRIKALIALGIFTFMSTLDGSIVNIALPTMSKELHVSTSQITWVVTIYLIVISAIVLI
CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHCCCHHHHHHHHHHHHHHHHHHHHH
FGRLGDLIGKSRIARIGWGIFILGSALAGLNFGWGLGFLLFARVIQAIGASMFMATGFGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISEIFPPESRARALSISAMFVSVGSIAGPALGGLILQVASWNYIFWINVPIGILAWIFGN
HHHHCCCCHHHHHEEHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCC
HALPKEKTSGKWSDIDFKGGTLMTSVIVLLFLALNFGQALGWTNPLIIIGALLGFILFGI
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
FILTEKKVAQPLLDLGIFKSKLFSMSIIMALFNFTVAMFSSILLPFYLQDFRNYGPGLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
MIMMAYPVAMLIASPLAGSAADKMDKEIVTFVGISGIVLSQLGYLLINPHSAPWLVVVIL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHH
LIQGMSMGIFQSPNNALIMETVDRKYLGIAGSVNSLARNMAFVLGTSLATLILFTAMSNQ
HHCCCCCCEEECCCCEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LGYKVTTYLHNQPDVFLHGFHVAFYFSTFLVLVTWVLGLFRLLGRKK
CCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]