Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is ydhF
Identifier: 15672357
GI number: 15672357
Start: 378449
End: 379444
Strand: Direct
Name: ydhF
Synonym: L178384
Alternate gene names: 15672357
Gene position: 378449-379444 (Clockwise)
Preceding gene: 15672354
Following gene: 15672360
Centisome position: 16.0
GC content: 34.04
Gene sequence:
>996_bases ATGAGTATTTTGCCAGGCTTTCTGCTCTCCTTTGCCATTGCTATAGTAAGTTATTTACTCAATCGTTTCATCTTCCATAG TTTAGGTTCAGCAACCATTGCAATATTATTAGGAATTATTTTAGGTAATTTGTACTTCAAACAAGTCACTTTATTTGCAG GAACAGCTTGGTCAGAAAAAAAACTTCTGGAATTTTCAGTGATGTTTTTAGGGGCCACAGTCACTTTCCAAACCATTGGT AAGTTAGGATTCTCCGGAGTAGGATTTATACTAATACAAATGATTTCAACAATTATTTTTGTTTTGTTTATGGGTAAAAA ACTAGGATTTTCTGCTAATGTTTCTGCCCTAATGGCTTCTGGGAATGCAGTTTGTGGTTCATCAGCAATTGCCGCAGTTG AACCAGTTATTGGAGCTGAAACCAGTGAGAAAAGAACATCGATTGCGATGGTCAATCTTATGGGAACTATTTTAATGCTA AGTCTTCCATTTTTAGGAACTTGGATGTTCGGTAATAATGATTTATTAAGGGGGGCACTGATTGGTGGAACAGAACAATC TGTTGGTCAAGTCGTTGCTTCAGCAACAATGGTAAATCCAAACACAACAACCTTAGCCACTCTATTTAAAATTATGCGAA TTATCATGCTCGTTTTTGTTGTTTTATATTTTGGTTTCAGAAGTAAAAAACAAAAAAGAAATGAACAAGGACCTACTCAA ATAAAAATTAAAAGAAATTCTTTTTTACCCTGGTATGTTCTTGGTTTCTTAGTGCTTTGTACTTTAGATACATTGATTCA TTTTGTGCCGGAAGTTTCAGCTACCGCAAAATTTCTATCCGGTTGGTGTGAAACCATTGCCTTAGCTGCTATTGGTTTAC GACTAAATTTGGTTGAATTTATAAAAGCAGGAAAAAAATTACTGATTTATGGTTTATCTACTTTAGTCTTTCAAGTAGTT CTTGCACTTATTTTAATAAGCCTTTTAATCAAATAA
Upstream 100 bases:
>100_bases GGAGATTGTGTAAACTAATTGATGCTAGACAATTAAAAAAGGAAAAAGTAGAAAAATGTTAAAATTAAAAAATTATATTA AAAATGATAGACAGGCCATA
Downstream 100 bases:
>100_bases TTAGAATTAAAACGATAATAAAGTCACTAAACCAGAGATTTAGTGACTTTTTTGTGCTAATTATTATCAGTTAAATTTTT GAACCTAGTAAAAAATTATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MSILPGFLLSFAIAIVSYLLNRFIFHSLGSATIAILLGIILGNLYFKQVTLFAGTAWSEKKLLEFSVMFLGATVTFQTIG KLGFSGVGFILIQMISTIIFVLFMGKKLGFSANVSALMASGNAVCGSSAIAAVEPVIGAETSEKRTSIAMVNLMGTILML SLPFLGTWMFGNNDLLRGALIGGTEQSVGQVVASATMVNPNTTTLATLFKIMRIIMLVFVVLYFGFRSKKQKRNEQGPTQ IKIKRNSFLPWYVLGFLVLCTLDTLIHFVPEVSATAKFLSGWCETIALAAIGLRLNLVEFIKAGKKLLIYGLSTLVFQVV LALILISLLIK
Sequences:
>Translated_331_residues MSILPGFLLSFAIAIVSYLLNRFIFHSLGSATIAILLGIILGNLYFKQVTLFAGTAWSEKKLLEFSVMFLGATVTFQTIG KLGFSGVGFILIQMISTIIFVLFMGKKLGFSANVSALMASGNAVCGSSAIAAVEPVIGAETSEKRTSIAMVNLMGTILML SLPFLGTWMFGNNDLLRGALIGGTEQSVGQVVASATMVNPNTTTLATLFKIMRIIMLVFVVLYFGFRSKKQKRNEQGPTQ IKIKRNSFLPWYVLGFLVLCTLDTLIHFVPEVSATAKFLSGWCETIALAAIGLRLNLVEFIKAGKKLLIYGLSTLVFQVV LALILISLLIK >Mature_330_residues SILPGFLLSFAIAIVSYLLNRFIFHSLGSATIAILLGIILGNLYFKQVTLFAGTAWSEKKLLEFSVMFLGATVTFQTIGK LGFSGVGFILIQMISTIIFVLFMGKKLGFSANVSALMASGNAVCGSSAIAAVEPVIGAETSEKRTSIAMVNLMGTILMLS LPFLGTWMFGNNDLLRGALIGGTEQSVGQVVASATMVNPNTTTLATLFKIMRIIMLVFVVLYFGFRSKKQKRNEQGPTQI KIKRNSFLPWYVLGFLVLCTLDTLIHFVPEVSATAKFLSGWCETIALAAIGLRLNLVEFIKAGKKLLIYGLSTLVFQVVL ALILISLLIK
Specific function: Unknown
COG id: COG2855
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0324 family
Homologues:
Organism=Escherichia coli, GI1788482, Length=289, Percent_Identity=28.719723183391, Blast_Score=113, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): YDHF_LACLA (Q9CII5)
Other databases:
- EMBL: AE005176 - PIR: G86671 - RefSeq: NP_266531.1 - GeneID: 1113986 - GenomeReviews: AE005176_GR - KEGG: lla:L178384 - NMPDR: fig|272623.1.peg.383 - HOGENOM: HBG499159 - OMA: CETIALA - ProtClustDB: CLSK2460150 - BioCyc: LLAC272623:L178384-MONOMER - InterPro: IPR018383
Pfam domain/function: PF03601 Cons_hypoth698
EC number: NA
Molecular weight: Translated: 35890; Mature: 35759
Theoretical pI: Translated: 10.53; Mature: 10.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0xbbb3b7c)-; HASH(0xb3d5e74)-; HASH(0xbc85ec8)-; HASH(0xb824018)-; HASH(0xbb4a114)-; HASH(0xc4ccc70)-; HASH(0xca4ddc8)-; HASH(0xcc069b4)-;
Cys/Met content:
0.9 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSILPGFLLSFAIAIVSYLLNRFIFHSLGSATIAILLGIILGNLYFKQVTLFAGTAWSEK CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH KLLEFSVMFLGATVTFQTIGKLGFSGVGFILIQMISTIIFVLFMGKKLGFSANVSALMAS HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHC GNAVCGSSAIAAVEPVIGAETSEKRTSIAMVNLMGTILMLSLPFLGTWMFGNNDLLRGAL CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHH IGGTEQSVGQVVASATMVNPNTTTLATLFKIMRIIMLVFVVLYFGFRSKKQKRNEQGPTQ CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCE IKIKRNSFLPWYVLGFLVLCTLDTLIHFVPEVSATAKFLSGWCETIALAAIGLRLNLVEF EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IKAGKKLLIYGLSTLVFQVVLALILISLLIK HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCH >Mature Secondary Structure SILPGFLLSFAIAIVSYLLNRFIFHSLGSATIAILLGIILGNLYFKQVTLFAGTAWSEK CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH KLLEFSVMFLGATVTFQTIGKLGFSGVGFILIQMISTIIFVLFMGKKLGFSANVSALMAS HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHC GNAVCGSSAIAAVEPVIGAETSEKRTSIAMVNLMGTILMLSLPFLGTWMFGNNDLLRGAL CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHH IGGTEQSVGQVVASATMVNPNTTTLATLFKIMRIIMLVFVVLYFGFRSKKQKRNEQGPTQ CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCE IKIKRNSFLPWYVLGFLVLCTLDTLIHFVPEVSATAKFLSGWCETIALAAIGLRLNLVEF EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IKAGKKLLIYGLSTLVFQVVLALILISLLIK HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCH
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11337471