Definition Lactococcus lactis subsp. lactis Il1403, complete genome.
Accession NC_002662
Length 2,365,589

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The map label for this gene is ydhF

Identifier: 15672357

GI number: 15672357

Start: 378449

End: 379444

Strand: Direct

Name: ydhF

Synonym: L178384

Alternate gene names: 15672357

Gene position: 378449-379444 (Clockwise)

Preceding gene: 15672354

Following gene: 15672360

Centisome position: 16.0

GC content: 34.04

Gene sequence:

>996_bases
ATGAGTATTTTGCCAGGCTTTCTGCTCTCCTTTGCCATTGCTATAGTAAGTTATTTACTCAATCGTTTCATCTTCCATAG
TTTAGGTTCAGCAACCATTGCAATATTATTAGGAATTATTTTAGGTAATTTGTACTTCAAACAAGTCACTTTATTTGCAG
GAACAGCTTGGTCAGAAAAAAAACTTCTGGAATTTTCAGTGATGTTTTTAGGGGCCACAGTCACTTTCCAAACCATTGGT
AAGTTAGGATTCTCCGGAGTAGGATTTATACTAATACAAATGATTTCAACAATTATTTTTGTTTTGTTTATGGGTAAAAA
ACTAGGATTTTCTGCTAATGTTTCTGCCCTAATGGCTTCTGGGAATGCAGTTTGTGGTTCATCAGCAATTGCCGCAGTTG
AACCAGTTATTGGAGCTGAAACCAGTGAGAAAAGAACATCGATTGCGATGGTCAATCTTATGGGAACTATTTTAATGCTA
AGTCTTCCATTTTTAGGAACTTGGATGTTCGGTAATAATGATTTATTAAGGGGGGCACTGATTGGTGGAACAGAACAATC
TGTTGGTCAAGTCGTTGCTTCAGCAACAATGGTAAATCCAAACACAACAACCTTAGCCACTCTATTTAAAATTATGCGAA
TTATCATGCTCGTTTTTGTTGTTTTATATTTTGGTTTCAGAAGTAAAAAACAAAAAAGAAATGAACAAGGACCTACTCAA
ATAAAAATTAAAAGAAATTCTTTTTTACCCTGGTATGTTCTTGGTTTCTTAGTGCTTTGTACTTTAGATACATTGATTCA
TTTTGTGCCGGAAGTTTCAGCTACCGCAAAATTTCTATCCGGTTGGTGTGAAACCATTGCCTTAGCTGCTATTGGTTTAC
GACTAAATTTGGTTGAATTTATAAAAGCAGGAAAAAAATTACTGATTTATGGTTTATCTACTTTAGTCTTTCAAGTAGTT
CTTGCACTTATTTTAATAAGCCTTTTAATCAAATAA

Upstream 100 bases:

>100_bases
GGAGATTGTGTAAACTAATTGATGCTAGACAATTAAAAAAGGAAAAAGTAGAAAAATGTTAAAATTAAAAAATTATATTA
AAAATGATAGACAGGCCATA

Downstream 100 bases:

>100_bases
TTAGAATTAAAACGATAATAAAGTCACTAAACCAGAGATTTAGTGACTTTTTTGTGCTAATTATTATCAGTTAAATTTTT
GAACCTAGTAAAAAATTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSILPGFLLSFAIAIVSYLLNRFIFHSLGSATIAILLGIILGNLYFKQVTLFAGTAWSEKKLLEFSVMFLGATVTFQTIG
KLGFSGVGFILIQMISTIIFVLFMGKKLGFSANVSALMASGNAVCGSSAIAAVEPVIGAETSEKRTSIAMVNLMGTILML
SLPFLGTWMFGNNDLLRGALIGGTEQSVGQVVASATMVNPNTTTLATLFKIMRIIMLVFVVLYFGFRSKKQKRNEQGPTQ
IKIKRNSFLPWYVLGFLVLCTLDTLIHFVPEVSATAKFLSGWCETIALAAIGLRLNLVEFIKAGKKLLIYGLSTLVFQVV
LALILISLLIK

Sequences:

>Translated_331_residues
MSILPGFLLSFAIAIVSYLLNRFIFHSLGSATIAILLGIILGNLYFKQVTLFAGTAWSEKKLLEFSVMFLGATVTFQTIG
KLGFSGVGFILIQMISTIIFVLFMGKKLGFSANVSALMASGNAVCGSSAIAAVEPVIGAETSEKRTSIAMVNLMGTILML
SLPFLGTWMFGNNDLLRGALIGGTEQSVGQVVASATMVNPNTTTLATLFKIMRIIMLVFVVLYFGFRSKKQKRNEQGPTQ
IKIKRNSFLPWYVLGFLVLCTLDTLIHFVPEVSATAKFLSGWCETIALAAIGLRLNLVEFIKAGKKLLIYGLSTLVFQVV
LALILISLLIK
>Mature_330_residues
SILPGFLLSFAIAIVSYLLNRFIFHSLGSATIAILLGIILGNLYFKQVTLFAGTAWSEKKLLEFSVMFLGATVTFQTIGK
LGFSGVGFILIQMISTIIFVLFMGKKLGFSANVSALMASGNAVCGSSAIAAVEPVIGAETSEKRTSIAMVNLMGTILMLS
LPFLGTWMFGNNDLLRGALIGGTEQSVGQVVASATMVNPNTTTLATLFKIMRIIMLVFVVLYFGFRSKKQKRNEQGPTQI
KIKRNSFLPWYVLGFLVLCTLDTLIHFVPEVSATAKFLSGWCETIALAAIGLRLNLVEFIKAGKKLLIYGLSTLVFQVVL
ALILISLLIK

Specific function: Unknown

COG id: COG2855

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0324 family

Homologues:

Organism=Escherichia coli, GI1788482, Length=289, Percent_Identity=28.719723183391, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDHF_LACLA (Q9CII5)

Other databases:

- EMBL:   AE005176
- PIR:   G86671
- RefSeq:   NP_266531.1
- GeneID:   1113986
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L178384
- NMPDR:   fig|272623.1.peg.383
- HOGENOM:   HBG499159
- OMA:   CETIALA
- ProtClustDB:   CLSK2460150
- BioCyc:   LLAC272623:L178384-MONOMER
- InterPro:   IPR018383

Pfam domain/function: PF03601 Cons_hypoth698

EC number: NA

Molecular weight: Translated: 35890; Mature: 35759

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xbbb3b7c)-; HASH(0xb3d5e74)-; HASH(0xbc85ec8)-; HASH(0xb824018)-; HASH(0xbb4a114)-; HASH(0xc4ccc70)-; HASH(0xca4ddc8)-; HASH(0xcc069b4)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSILPGFLLSFAIAIVSYLLNRFIFHSLGSATIAILLGIILGNLYFKQVTLFAGTAWSEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
KLLEFSVMFLGATVTFQTIGKLGFSGVGFILIQMISTIIFVLFMGKKLGFSANVSALMAS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHC
GNAVCGSSAIAAVEPVIGAETSEKRTSIAMVNLMGTILMLSLPFLGTWMFGNNDLLRGAL
CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHH
IGGTEQSVGQVVASATMVNPNTTTLATLFKIMRIIMLVFVVLYFGFRSKKQKRNEQGPTQ
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCE
IKIKRNSFLPWYVLGFLVLCTLDTLIHFVPEVSATAKFLSGWCETIALAAIGLRLNLVEF
EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKAGKKLLIYGLSTLVFQVVLALILISLLIK
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure 
SILPGFLLSFAIAIVSYLLNRFIFHSLGSATIAILLGIILGNLYFKQVTLFAGTAWSEK
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
KLLEFSVMFLGATVTFQTIGKLGFSGVGFILIQMISTIIFVLFMGKKLGFSANVSALMAS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHC
GNAVCGSSAIAAVEPVIGAETSEKRTSIAMVNLMGTILMLSLPFLGTWMFGNNDLLRGAL
CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHH
IGGTEQSVGQVVASATMVNPNTTTLATLFKIMRIIMLVFVVLYFGFRSKKQKRNEQGPTQ
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCE
IKIKRNSFLPWYVLGFLVLCTLDTLIHFVPEVSATAKFLSGWCETIALAAIGLRLNLVEF
EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKAGKKLLIYGLSTLVFQVVLALILISLLIK
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11337471