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The map label for this gene is ydhC

Identifier: 15672350

GI number: 15672350

Start: 371975

End: 372952

Strand: Direct

Name: ydhC

Synonym: L171943

Alternate gene names: 15672350

Gene position: 371975-372952 (Clockwise)

Preceding gene: 15672349

Following gene: 15672351

Centisome position: 15.72

GC content: 35.38

Gene sequence:

>978_bases
ATGAAAATTTTAGAAAAAAAGTCAACCTTGAAAATTTCCAAAACTTATCGAGCTTTAGGGACAGTCATTAGCTTAACAAT
TTATGGTCATCAAGACGAGGAGCTATTAGATAAAACTTATCAATTAATCAAGTATTATGAGCAGCTTTTTACGGTAAATC
GTGACCAATCAGAATTGATGGCTGTCAATCATAAAGCGGGAATAGAACCTGTTCAAGTATCAGGAGCAGTTTATGGCTTA
ACAAAAATAGCGCTTGAAAAAAGCAAGGAAGCATTTGGTTTTAATGCAGCAATTGGTCCTCTCGTTAAACTTTGGCATAT
TGGCTTTTCAGACGCTAAATTGCCAACTCAAGCAGAAATAGATGAAAAGTTAAAAATAATTAATCCAGATAGGATTATTC
TAAGGGATGATGAATTTTCAATTTTTTTGCCAGAAAAAGGGATGGAAATTGACTTAGGAGCGATAGCAAAAGGTTATATT
GCCGACCGGATTAAAGATTTTTGGCATGCTTACGGTATCTCCTCCGGCATCATTAATCTAGGAGGAAATCTTCTATTGGT
GGGAGAAGCTCCGCATCAGACAGATAAAAAATGGCGCATAGGCATTAGAAATCCTTTAACTAATGATAAAAAATCTGTGC
TACAGCTTTTGTCTGGTGAAGGTTCTGTTGTGACTTCGGGAATTTCTGAGCGTTACTTGAAAGTGAATGATAAGATTTAC
CACCATATTATTGACTCCAAAACAGGTTATCCACACCATAATCAGCTGGCCAGTGTTACTATTTTATCCAAAAAATCAAT
TGATGGTGAAATTGAAACGACCCGATTATTTTTTGCTGACGGTCCAATTGAAAATTGGCTGACAGAAAATCCGGAAGTTT
ATGGCGCTATTTTTATTAGTAAAGATAAGAAAATAAAAGCCGTTGGAATTCCCCAAAGTCAGATTTATGTTGCTGATCAA
AGTTTTGAATTTGAATAA

Upstream 100 bases:

>100_bases
AACCTGAAAATTCGGCCTATCTACAATTTTTGGAAGAGGGAGAAACTTGGAAGTTTGATGATATTGGAGAATTAAGAGGA
AAATCGGAAGAAGAAGACTG

Downstream 100 bases:

>100_bases
GTTAAAATTTAAGTGTAGATAATTTCTGTCAGTACTTTTGCCAATAAAAATTTACTGACAGAAATAAAAAAACCGCCAAA
TGTAGTGACCCCCAAAATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKILEKKSTLKISKTYRALGTVISLTIYGHQDEELLDKTYQLIKYYEQLFTVNRDQSELMAVNHKAGIEPVQVSGAVYGL
TKIALEKSKEAFGFNAAIGPLVKLWHIGFSDAKLPTQAEIDEKLKIINPDRIILRDDEFSIFLPEKGMEIDLGAIAKGYI
ADRIKDFWHAYGISSGIINLGGNLLLVGEAPHQTDKKWRIGIRNPLTNDKKSVLQLLSGEGSVVTSGISERYLKVNDKIY
HHIIDSKTGYPHHNQLASVTILSKKSIDGEIETTRLFFADGPIENWLTENPEVYGAIFISKDKKIKAVGIPQSQIYVADQ
SFEFE

Sequences:

>Translated_325_residues
MKILEKKSTLKISKTYRALGTVISLTIYGHQDEELLDKTYQLIKYYEQLFTVNRDQSELMAVNHKAGIEPVQVSGAVYGL
TKIALEKSKEAFGFNAAIGPLVKLWHIGFSDAKLPTQAEIDEKLKIINPDRIILRDDEFSIFLPEKGMEIDLGAIAKGYI
ADRIKDFWHAYGISSGIINLGGNLLLVGEAPHQTDKKWRIGIRNPLTNDKKSVLQLLSGEGSVVTSGISERYLKVNDKIY
HHIIDSKTGYPHHNQLASVTILSKKSIDGEIETTRLFFADGPIENWLTENPEVYGAIFISKDKKIKAVGIPQSQIYVADQ
SFEFE
>Mature_325_residues
MKILEKKSTLKISKTYRALGTVISLTIYGHQDEELLDKTYQLIKYYEQLFTVNRDQSELMAVNHKAGIEPVQVSGAVYGL
TKIALEKSKEAFGFNAAIGPLVKLWHIGFSDAKLPTQAEIDEKLKIINPDRIILRDDEFSIFLPEKGMEIDLGAIAKGYI
ADRIKDFWHAYGISSGIINLGGNLLLVGEAPHQTDKKWRIGIRNPLTNDKKSVLQLLSGEGSVVTSGISERYLKVNDKIY
HHIIDSKTGYPHHNQLASVTILSKKSIDGEIETTRLFFADGPIENWLTENPEVYGAIFISKDKKIKAVGIPQSQIYVADQ
SFEFE

Specific function: Involved in the conversion of aminoimidazole ribotide (AIR), a purine intermediate, to the 4-amino-5-hydroxymethyl-2- methyl pyrimidine (HMP) moiety of thiamine [H]

COG id: COG1477

COG function: function code H; Membrane-associated lipoprotein involved in thiamine biosynthesis

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ApbE family [H]

Homologues:

Organism=Escherichia coli, GI1788543, Length=279, Percent_Identity=27.2401433691756, Blast_Score=88, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003374 [H]

Pfam domain/function: PF02424 ApbE [H]

EC number: NA

Molecular weight: Translated: 36451; Mature: 36451

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILEKKSTLKISKTYRALGTVISLTIYGHQDEELLDKTYQLIKYYEQLFTVNRDQSELM
CCCCCCCCCEEHHHHHHHHCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHE
AVNHKAGIEPVQVSGAVYGLTKIALEKSKEAFGFNAAIGPLVKLWHIGFSDAKLPTQAEI
EECCCCCCCEEEECCCHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHCC
DEKLKIINPDRIILRDDEFSIFLPEKGMEIDLGAIAKGYIADRIKDFWHAYGISSGIINL
CCCEEEECCCEEEEECCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
GGNLLLVGEAPHQTDKKWRIGIRNPLTNDKKSVLQLLSGEGSVVTSGISERYLKVNDKIY
CCCEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEECCCHHCEEEECHHHH
HHIIDSKTGYPHHNQLASVTILSKKSIDGEIETTRLFFADGPIENWLTENPEVYGAIFIS
HHHHCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCHHHHHCCCCCEEEEEEEE
KDKKIKAVGIPQSQIYVADQSFEFE
CCCEEEEECCCCCEEEEECCCCCCC
>Mature Secondary Structure
MKILEKKSTLKISKTYRALGTVISLTIYGHQDEELLDKTYQLIKYYEQLFTVNRDQSELM
CCCCCCCCCEEHHHHHHHHCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHE
AVNHKAGIEPVQVSGAVYGLTKIALEKSKEAFGFNAAIGPLVKLWHIGFSDAKLPTQAEI
EECCCCCCCEEEECCCHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHCC
DEKLKIINPDRIILRDDEFSIFLPEKGMEIDLGAIAKGYIADRIKDFWHAYGISSGIINL
CCCEEEECCCEEEEECCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
GGNLLLVGEAPHQTDKKWRIGIRNPLTNDKKSVLQLLSGEGSVVTSGISERYLKVNDKIY
CCCEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEECCCHHCEEEECHHHH
HHIIDSKTGYPHHNQLASVTILSKKSIDGEIETTRLFFADGPIENWLTENPEVYGAIFIS
HHHHCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCHHHHHCCCCCEEEEEEEE
KDKKIKAVGIPQSQIYVADQSFEFE
CCCEEEEECCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]