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The map label for this gene is yciC

Identifier: 15672267

GI number: 15672267

Start: 284496

End: 286634

Strand: Direct

Name: yciC

Synonym: L84502

Alternate gene names: 15672267

Gene position: 284496-286634 (Clockwise)

Preceding gene: 15672266

Following gene: 15672268

Centisome position: 12.03

GC content: 36.84

Gene sequence:

>2139_bases
GTGGAAAATGTTAAAAAAATTGCTGAATTGTTGAATATTAAAAATTCACAAGTTGAAAAAGTATTAGAATTGACGGCAGA
GGGGAACACAGTTCCGTTTATTGCTCGTTATCGTAAAGAAGCAACAGGTTCACTTGACGAAGTTGAAATCAAAAAAATTA
TTGATGAAGATAATTTACTGACAAAATTATCAGAACGTAAAACGGCTGTTTTGTCAAAAATTGAAGAGCTTGGTAAGTTG
ACTGATTCGCTAAAAGCACAAATTTTGGCTGCTGAAAAACTAACAGAAGTTGAAGATTTATATCTGCCTTACAAAGAAAA
ACGGCGCACAAAAGCAACGATTGCAAAGGAAAATGGTTTATTTCCTTTGGCTCAATTGATTGTAAAAAATTCAGCGAATC
TTGAAGAAGAAGCTGAAAAATTTGTCAATGAGAATTTTACAAGCCCTCAAAAAGCTTTGGAAGGTGCTGTGGATATCTTG
TCAGAAGCGATTTCTGAGGATGCACGTTTGCGCTCATGGCTGACCGGTGAAATCAAAAACAATAGTTTACTGACAAGTAG
TTTGAAAAAAGATGCCGTTGATGAAAAGCAAGTTTTTCAAATGTATTATGAATTCTCAGAAAAAGTTTCAGAATTACCAA
ATTATCGTGTATTGGCTTTAAACCGTGGTGAAAAATTGGGGATTCTGTCAGTAAAATTTGAAAATAACGAAGATAAAATT
TTACGTTATTTTGCCGCCCGTTTTGCTGCTCAAAATAATCCAATGATGCAAGTGGCGATTAAAGATGCTGTCAAGAAAAA
ATTGATTCCGGCTATGGAACGTAGTATTCGGACTGAATTGACAGAAAAAGCTGAAGCATCTGCCATCGAAGTTTTTGGCG
AAAATTTGAAAAATTTATTATTGGTGGCTCCGCTTAAAGGGCGTGTAGTCATGGGATTTGACCCTGCTTACCGTACTGGA
GCAAAGCTTGCTATTGTTGATGAGACAGGTAAATTATTGATGACAACGGTCATTTATCCTGTGAAGCCAGCAAATGCAGG
TCAAATTGCTCAAGCGAAAAAAGATTTAGCAAAATTCATTCGAGAATATGGTGTGAATATGATTGCGATTGGGAATGGAA
CTGCCAGTCGCGAATCTGAAAGTTTTGTTGCAGAAGTACTCAAGGAAAATAATTTTTCTGATGTTTATTATGTGATTGTC
AGTGAATCTGGAGCCTCTGTTTATTCAGCGAGCGAGTTGGCACGTGAAGAATTTCCAGAATTGACTGTTGAAAAACGTTC
AGCAATTTCGATTGCACGCCGTTTGCAAGATCCATTGGCTGAACTTGTAAAAATCGAACCAAAAGCCATTGGTGTTGGTC
AATATCAACATGATGTTTCTGAGAAAAAATTAACAGAAAATCTTGATTTTGTCGTGGAAACAGTAGTTAACCAAGTTGGT
GTTAATGTCAATACAGCCAGTCCTAGTTTGCTTTCACACGTAGCTGGCCTTAATAAAAGTTTGGCACAGAATGTAGTAAA
ATATCGTGAAGAAAATGGCGCACTCAAAACAAGAGCGGAACTAAAAAAAGTCCCACGTTTGGGAGCTAAAGCATTTGAAC
AAGCGGCAGGTTTCTTAAGAATTCCAGAAGGTAAAAATTTCCTTGACAACACCGGTGTTCACCCAGAATCTTATAAAGTG
ACGGAACAACTTTTGGCGGAAATTTCCGCTGATAAACCTGTCAGTAACGAAGAATTGCTGACCAAACTTTCATCAGTAAA
TATTCCTGAAATGGCTGAAAAACTTGGTCTTGGTCAGGAAACATTGACTGATATTATCAATGATTTACAAAAACCAGGCC
GTGATTTGCGTGATAGTTTTGATGCCCCAATTTTAAGACAAGATGTTTTGTCAGCTGGAGATTTACAAATTGGTCAACAA
CTTGAAGGTGTAGTTCGTAATGTTGTTGATTTCGGTGCCTTTATTGATATCGGAATTAAAAATGATGGCTTGGCACACGT
TTCTGATTTGAGTAAATCTTTTGTCAAAAATCCAAGTGATGTTGTCGCTGTAGGGCAAATCGTAACGGTTTGGGTTAAAT
CTCTCGATTTACAAAGAGGGAAAATTAATTTAACCTTAGTGAACCCACGAGAAAAATAA

Upstream 100 bases:

>100_bases
CCTGTTTGGGAGCGATTTTTTTGTGACTTTTTTGGTAAAATAGAGGTAGGACACTGTCCTTTAAAATTGATGACAAAAAC
TAGTTAAGGATTATTTCTAA

Downstream 100 bases:

>100_bases
TCTGTCAGTAAATTTTTTTGATTCTAGTTTCATTAAGCGAAGCTGTCAGTAAAATTTACTGACAGTCGTTTGTGCGAGCC
TGTCAAAGGAGGAAAAGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 712; Mature: 712

Protein sequence:

>712_residues
MENVKKIAELLNIKNSQVEKVLELTAEGNTVPFIARYRKEATGSLDEVEIKKIIDEDNLLTKLSERKTAVLSKIEELGKL
TDSLKAQILAAEKLTEVEDLYLPYKEKRRTKATIAKENGLFPLAQLIVKNSANLEEEAEKFVNENFTSPQKALEGAVDIL
SEAISEDARLRSWLTGEIKNNSLLTSSLKKDAVDEKQVFQMYYEFSEKVSELPNYRVLALNRGEKLGILSVKFENNEDKI
LRYFAARFAAQNNPMMQVAIKDAVKKKLIPAMERSIRTELTEKAEASAIEVFGENLKNLLLVAPLKGRVVMGFDPAYRTG
AKLAIVDETGKLLMTTVIYPVKPANAGQIAQAKKDLAKFIREYGVNMIAIGNGTASRESESFVAEVLKENNFSDVYYVIV
SESGASVYSASELAREEFPELTVEKRSAISIARRLQDPLAELVKIEPKAIGVGQYQHDVSEKKLTENLDFVVETVVNQVG
VNVNTASPSLLSHVAGLNKSLAQNVVKYREENGALKTRAELKKVPRLGAKAFEQAAGFLRIPEGKNFLDNTGVHPESYKV
TEQLLAEISADKPVSNEELLTKLSSVNIPEMAEKLGLGQETLTDIINDLQKPGRDLRDSFDAPILRQDVLSAGDLQIGQQ
LEGVVRNVVDFGAFIDIGIKNDGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDLQRGKINLTLVNPREK

Sequences:

>Translated_712_residues
MENVKKIAELLNIKNSQVEKVLELTAEGNTVPFIARYRKEATGSLDEVEIKKIIDEDNLLTKLSERKTAVLSKIEELGKL
TDSLKAQILAAEKLTEVEDLYLPYKEKRRTKATIAKENGLFPLAQLIVKNSANLEEEAEKFVNENFTSPQKALEGAVDIL
SEAISEDARLRSWLTGEIKNNSLLTSSLKKDAVDEKQVFQMYYEFSEKVSELPNYRVLALNRGEKLGILSVKFENNEDKI
LRYFAARFAAQNNPMMQVAIKDAVKKKLIPAMERSIRTELTEKAEASAIEVFGENLKNLLLVAPLKGRVVMGFDPAYRTG
AKLAIVDETGKLLMTTVIYPVKPANAGQIAQAKKDLAKFIREYGVNMIAIGNGTASRESESFVAEVLKENNFSDVYYVIV
SESGASVYSASELAREEFPELTVEKRSAISIARRLQDPLAELVKIEPKAIGVGQYQHDVSEKKLTENLDFVVETVVNQVG
VNVNTASPSLLSHVAGLNKSLAQNVVKYREENGALKTRAELKKVPRLGAKAFEQAAGFLRIPEGKNFLDNTGVHPESYKV
TEQLLAEISADKPVSNEELLTKLSSVNIPEMAEKLGLGQETLTDIINDLQKPGRDLRDSFDAPILRQDVLSAGDLQIGQQ
LEGVVRNVVDFGAFIDIGIKNDGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDLQRGKINLTLVNPREK
>Mature_712_residues
MENVKKIAELLNIKNSQVEKVLELTAEGNTVPFIARYRKEATGSLDEVEIKKIIDEDNLLTKLSERKTAVLSKIEELGKL
TDSLKAQILAAEKLTEVEDLYLPYKEKRRTKATIAKENGLFPLAQLIVKNSANLEEEAEKFVNENFTSPQKALEGAVDIL
SEAISEDARLRSWLTGEIKNNSLLTSSLKKDAVDEKQVFQMYYEFSEKVSELPNYRVLALNRGEKLGILSVKFENNEDKI
LRYFAARFAAQNNPMMQVAIKDAVKKKLIPAMERSIRTELTEKAEASAIEVFGENLKNLLLVAPLKGRVVMGFDPAYRTG
AKLAIVDETGKLLMTTVIYPVKPANAGQIAQAKKDLAKFIREYGVNMIAIGNGTASRESESFVAEVLKENNFSDVYYVIV
SESGASVYSASELAREEFPELTVEKRSAISIARRLQDPLAELVKIEPKAIGVGQYQHDVSEKKLTENLDFVVETVVNQVG
VNVNTASPSLLSHVAGLNKSLAQNVVKYREENGALKTRAELKKVPRLGAKAFEQAAGFLRIPEGKNFLDNTGVHPESYKV
TEQLLAEISADKPVSNEELLTKLSSVNIPEMAEKLGLGQETLTDIINDLQKPGRDLRDSFDAPILRQDVLSAGDLQIGQQ
LEGVVRNVVDFGAFIDIGIKNDGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDLQRGKINLTLVNPREK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=784, Percent_Identity=34.1836734693878, Blast_Score=408, Evalue=1e-113,
Organism=Homo sapiens, GI27597090, Length=577, Percent_Identity=24.0901213171577, Blast_Score=93, Evalue=7e-19,
Organism=Escherichia coli, GI87082262, Length=721, Percent_Identity=44.7988904299584, Blast_Score=555, Evalue=1e-159,
Organism=Escherichia coli, GI1787140, Length=73, Percent_Identity=42.4657534246575, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=716, Percent_Identity=32.8212290502793, Blast_Score=273, Evalue=2e-73,
Organism=Caenorhabditis elegans, GI17552892, Length=803, Percent_Identity=21.6687422166874, Blast_Score=91, Evalue=3e-18,
Organism=Drosophila melanogaster, GI62484314, Length=757, Percent_Identity=33.553500660502, Blast_Score=383, Evalue=1e-106,
Organism=Drosophila melanogaster, GI24640080, Length=585, Percent_Identity=22.9059829059829, Blast_Score=96, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 78772; Mature: 78772

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENVKKIAELLNIKNSQVEKVLELTAEGNTVPFIARYRKEATGSLDEVEIKKIIDEDNLL
CCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
TKLSERKTAVLSKIEELGKLTDSLKAQILAAEKLTEVEDLYLPYKEKRRTKATIAKENGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
FPLAQLIVKNSANLEEEAEKFVNENFTSPQKALEGAVDILSEAISEDARLRSWLTGEIKN
HHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NSLLTSSLKKDAVDEKQVFQMYYEFSEKVSELPNYRVLALNRGEKLGILSVKFENNEDKI
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEEECCCHHHH
LRYFAARFAAQNNPMMQVAIKDAVKKKLIPAMERSIRTELTEKAEASAIEVFGENLKNLL
HHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEE
LVAPLKGRVVMGFDPAYRTGAKLAIVDETGKLLMTTVIYPVKPANAGQIAQAKKDLAKFI
EEECCCCCEEEECCHHHHCCCEEEEEECCCCEEEHHHEEECCCCCCCHHHHHHHHHHHHH
REYGVNMIAIGNGTASRESESFVAEVLKENNFSDVYYVIVSESGASVYSASELAREEFPE
HHHCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCC
LTVEKRSAISIARRLQDPLAELVKIEPKAIGVGQYQHDVSEKKLTENLDFVVETVVNQVG
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
VNVNTASPSLLSHVAGLNKSLAQNVVKYREENGALKTRAELKKVPRLGAKAFEQAAGFLR
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHCCCCEE
IPEGKNFLDNTGVHPESYKVTEQLLAEISADKPVSNEELLTKLSSVNIPEMAEKLGLGQE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCHH
TLTDIINDLQKPGRDLRDSFDAPILRQDVLSAGDLQIGQQLEGVVRNVVDFGAFIDIGIK
HHHHHHHHHHCCCCHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEECC
NDGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDLQRGKINLTLVNPREK
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
>Mature Secondary Structure
MENVKKIAELLNIKNSQVEKVLELTAEGNTVPFIARYRKEATGSLDEVEIKKIIDEDNLL
CCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
TKLSERKTAVLSKIEELGKLTDSLKAQILAAEKLTEVEDLYLPYKEKRRTKATIAKENGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
FPLAQLIVKNSANLEEEAEKFVNENFTSPQKALEGAVDILSEAISEDARLRSWLTGEIKN
HHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NSLLTSSLKKDAVDEKQVFQMYYEFSEKVSELPNYRVLALNRGEKLGILSVKFENNEDKI
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEEECCCHHHH
LRYFAARFAAQNNPMMQVAIKDAVKKKLIPAMERSIRTELTEKAEASAIEVFGENLKNLL
HHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEE
LVAPLKGRVVMGFDPAYRTGAKLAIVDETGKLLMTTVIYPVKPANAGQIAQAKKDLAKFI
EEECCCCCEEEECCHHHHCCCEEEEEECCCCEEEHHHEEECCCCCCCHHHHHHHHHHHHH
REYGVNMIAIGNGTASRESESFVAEVLKENNFSDVYYVIVSESGASVYSASELAREEFPE
HHHCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCC
LTVEKRSAISIARRLQDPLAELVKIEPKAIGVGQYQHDVSEKKLTENLDFVVETVVNQVG
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
VNVNTASPSLLSHVAGLNKSLAQNVVKYREENGALKTRAELKKVPRLGAKAFEQAAGFLR
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHCCCCEE
IPEGKNFLDNTGVHPESYKVTEQLLAEISADKPVSNEELLTKLSSVNIPEMAEKLGLGQE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCHH
TLTDIINDLQKPGRDLRDSFDAPILRQDVLSAGDLQIGQQLEGVVRNVVDFGAFIDIGIK
HHHHHHHHHHCCCCHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEECC
NDGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDLQRGKINLTLVNPREK
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]