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The map label for this gene is ycfA

Identifier: 15672235

GI number: 15672235

Start: 249968

End: 250615

Strand: Direct

Name: ycfA

Synonym: L49937

Alternate gene names: 15672235

Gene position: 249968-250615 (Clockwise)

Preceding gene: 15672233

Following gene: 15672236

Centisome position: 10.57

GC content: 35.49

Gene sequence:

>648_bases
ATGTCTGAAGAACAAACATTAAATGAGGTTTATGCTGATACCCTAAAAAAAATGGAAAATTTGACAGAAAAGCAAAAGAG
AGTTTTACAGGCGTCATTAGAGCTCTTTGCATCACAAGGCTTTGAAGCGACAACTTCTCAACAAATTGCAAAAAGGGCGG
GAGTTTCTGTTGGTTCTGTTTACCACACTTTCCCCACGAAACAAGCCATTCTTGTAGCGGTACTTGCACCTATCTTTGAG
GGTACAATGGATACTGTCGCCAATCAATTTAATGATAATACATTTGGCAAAGGATTTGAAAGCGTGGAAGAGCTCGTTAA
GGTAACCATTGCTGACCGTTTTTATTTTGCCGATAAAAATATAAATGTGATTCGCTTGATGCTGGGACAAATGCTTGTTA
ATTCCGTTTTTGTTGAAGACTTAAAAAAATTTTTCGAGCAACAGGCCAAACAGTTAGTTTTACCAACAATTGTTCGCCTC
CAAGCTGAACAAAAAATAAAAAATCTTCCGATTGAAAAAATTCTACAGATTCTTTTTTATCCTTTAGCGACCTATATAGG
TAAAAGAGTTTTGGGAATTAACAATATGTCATTAGAGGAAGAAATCGAATTTGCCACTGAAATTACTATAAAGACACTCA
AAGTTTAA

Upstream 100 bases:

>100_bases
ATGCTATTTTTATATAGCTTTATTAGACTTTATTTGATGTTCATTCTTCAAAATATTATAATGAATGAGTAATCATTTAT
TCAGTTTAAAAGGAGATATC

Downstream 100 bases:

>100_bases
TTTTTGACAATCATGAATTGAAGTGATAAAATTACTTCAACAAGAAAATGAACGAGCACTCATTCATTGTTTAAGGGAGA
ATAATATGAAATCACCGATT

Product: transcription regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcription Regulator; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MSEEQTLNEVYADTLKKMENLTEKQKRVLQASLELFASQGFEATTSQQIAKRAGVSVGSVYHTFPTKQAILVAVLAPIFE
GTMDTVANQFNDNTFGKGFESVEELVKVTIADRFYFADKNINVIRLMLGQMLVNSVFVEDLKKFFEQQAKQLVLPTIVRL
QAEQKIKNLPIEKILQILFYPLATYIGKRVLGINNMSLEEEIEFATEITIKTLKV

Sequences:

>Translated_215_residues
MSEEQTLNEVYADTLKKMENLTEKQKRVLQASLELFASQGFEATTSQQIAKRAGVSVGSVYHTFPTKQAILVAVLAPIFE
GTMDTVANQFNDNTFGKGFESVEELVKVTIADRFYFADKNINVIRLMLGQMLVNSVFVEDLKKFFEQQAKQLVLPTIVRL
QAEQKIKNLPIEKILQILFYPLATYIGKRVLGINNMSLEEEIEFATEITIKTLKV
>Mature_214_residues
SEEQTLNEVYADTLKKMENLTEKQKRVLQASLELFASQGFEATTSQQIAKRAGVSVGSVYHTFPTKQAILVAVLAPIFEG
TMDTVANQFNDNTFGKGFESVEELVKVTIADRFYFADKNINVIRLMLGQMLVNSVFVEDLKKFFEQQAKQLVLPTIVRLQ
AEQKIKNLPIEKILQILFYPLATYIGKRVLGINNMSLEEEIEFATEITIKTLKV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24348; Mature: 24216

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEQTLNEVYADTLKKMENLTEKQKRVLQASLELFASQGFEATTSQQIAKRAGVSVGSV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHH
YHTFPTKQAILVAVLAPIFEGTMDTVANQFNDNTFGKGFESVEELVKVTIADRFYFADKN
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHEEECCC
INVIRLMLGQMLVNSVFVEDLKKFFEQQAKQLVLPTIVRLQAEQKIKNLPIEKILQILFY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
PLATYIGKRVLGINNMSLEEEIEFATEITIKTLKV
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SEEQTLNEVYADTLKKMENLTEKQKRVLQASLELFASQGFEATTSQQIAKRAGVSVGSV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHH
YHTFPTKQAILVAVLAPIFEGTMDTVANQFNDNTFGKGFESVEELVKVTIADRFYFADKN
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHEEECCC
INVIRLMLGQMLVNSVFVEDLKKFFEQQAKQLVLPTIVRLQAEQKIKNLPIEKILQILFY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
PLATYIGKRVLGINNMSLEEEIEFATEITIKTLKV
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA