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The map label for this gene is ycbD

Identifier: 15672193

GI number: 15672193

Start: 212383

End: 213324

Strand: Direct

Name: ycbD

Synonym: L12335

Alternate gene names: 15672193

Gene position: 212383-213324 (Clockwise)

Preceding gene: 15672192

Following gene: 15672194

Centisome position: 8.98

GC content: 32.91

Gene sequence:

>942_bases
ATGATAACAAAGAGTAACATACTAATAACAGGTGGAGCAGGTTTTATTGGCTCAAGTTTAGCGAACGAATTACTACCTCA
AAATAAGATTACTGTTATTGATAATCTTTCGATGGGAGATTTTAATAATCTTCATGAAACAAGTAATCTTACAAAAATTT
TAGGTGATGTCACTGATAAAAATCTCCTGGTAAAAGTTTTGGAAGAAAATGATTTTGATTATATTTTTCATTTAGCAGCA
ATTGCTTCGGTTGCCGATTCAGTTGCACGGCCGTATGAAACTCATCAAGTTAATTTTGATAGTACGATGACACTTCTCGA
GATCTTACGTCAAAATAAAAAATCATTGAAACGATTTGTTTTTTCTTCAAGCGCAGCAGTTTATGGTGATGAGCCAACAC
TTCCTAAGCAGGAAGAGGGCACAATCCGCCCCCTTACTCCTTATGCAATTGATAAATTTGCATCTGAAAAAATGACAATG
ATTTATAATAATTTATATGATGTTCCTACCAGTGCAACACGCTTTTTCAATGTTTATGGACCAAATCAAAATCCCAATTC
ACCCTATTCAGGATTTATTTCCATTCTTGTTGACCGTTTGCGAGAAAATACAGAATTGACTATTTTTGGAGATGGAGAAC
AGTCTCGAGATTTTGTATATATAGAAGATGTTATTCAAGCATTATTACTAATAGCGACCTCTGAACAATCCTTTGGAGAA
GTCTATAATGTCGGGACTGGGGTCAAAAATTCAATAAACGATTTAACGAAATTTGCTCAAAAATTTACAAATAAAGAGTT
ATCTATCAAATTTGATGATGTGCGACAAGGAGATATCAAAGACTCAGTTTCCGATATTTCAAAACTTAAGGACATAGGAT
ACTCACCTAAATTTGATTTATCTAATGGTATGAAAAAGTACCTCAACTATGAATTTAAATAA

Upstream 100 bases:

>100_bases
AAATACCAGATGTCCCTAATATCTGCAGAAAAGCAGATTAAAAATTTGATACAAGAGGTTTCCTTGGCAAATAAGAAAAT
CAAAGATCTGGAGAGAAAAA

Downstream 100 bases:

>100_bases
TGAAAAACGAATTTAAAACAGGTATTTTTTTTACTGCAATTGCTCAGTATAGCACAGTCATTGTACAGCTTATAATCAAT
ATGATTCTCTCACGATTACT

Product: UDP-glucose 4-epimerase

Products: NA

Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MITKSNILITGGAGFIGSSLANELLPQNKITVIDNLSMGDFNNLHETSNLTKILGDVTDKNLLVKVLEENDFDYIFHLAA
IASVADSVARPYETHQVNFDSTMTLLEILRQNKKSLKRFVFSSSAAVYGDEPTLPKQEEGTIRPLTPYAIDKFASEKMTM
IYNNLYDVPTSATRFFNVYGPNQNPNSPYSGFISILVDRLRENTELTIFGDGEQSRDFVYIEDVIQALLLIATSEQSFGE
VYNVGTGVKNSINDLTKFAQKFTNKELSIKFDDVRQGDIKDSVSDISKLKDIGYSPKFDLSNGMKKYLNYEFK

Sequences:

>Translated_313_residues
MITKSNILITGGAGFIGSSLANELLPQNKITVIDNLSMGDFNNLHETSNLTKILGDVTDKNLLVKVLEENDFDYIFHLAA
IASVADSVARPYETHQVNFDSTMTLLEILRQNKKSLKRFVFSSSAAVYGDEPTLPKQEEGTIRPLTPYAIDKFASEKMTM
IYNNLYDVPTSATRFFNVYGPNQNPNSPYSGFISILVDRLRENTELTIFGDGEQSRDFVYIEDVIQALLLIATSEQSFGE
VYNVGTGVKNSINDLTKFAQKFTNKELSIKFDDVRQGDIKDSVSDISKLKDIGYSPKFDLSNGMKKYLNYEFK
>Mature_313_residues
MITKSNILITGGAGFIGSSLANELLPQNKITVIDNLSMGDFNNLHETSNLTKILGDVTDKNLLVKVLEENDFDYIFHLAA
IASVADSVARPYETHQVNFDSTMTLLEILRQNKKSLKRFVFSSSAAVYGDEPTLPKQEEGTIRPLTPYAIDKFASEKMTM
IYNNLYDVPTSATRFFNVYGPNQNPNSPYSGFISILVDRLRENTELTIFGDGEQSRDFVYIEDVIQALLLIATSEQSFGE
VYNVGTGVKNSINDLTKFAQKFTNKELSIKFDDVRQGDIKDSVSDISKLKDIGYSPKFDLSNGMKKYLNYEFK

Specific function: Galactose metabolism; third step. [C]

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family [H]

Homologues:

Organism=Homo sapiens, GI7657641, Length=319, Percent_Identity=30.4075235109718, Blast_Score=132, Evalue=3e-31,
Organism=Homo sapiens, GI42516563, Length=317, Percent_Identity=28.7066246056782, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI56237023, Length=330, Percent_Identity=28.4848484848485, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI56118217, Length=330, Percent_Identity=28.4848484848485, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI189083684, Length=330, Percent_Identity=28.4848484848485, Blast_Score=109, Evalue=4e-24,
Organism=Escherichia coli, GI1786974, Length=309, Percent_Identity=29.4498381877023, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI48994969, Length=334, Percent_Identity=29.3413173652695, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788353, Length=336, Percent_Identity=28.5714285714286, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1788365, Length=331, Percent_Identity=23.5649546827795, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790049, Length=316, Percent_Identity=26.2658227848101, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788366, Length=238, Percent_Identity=25.2100840336134, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17568069, Length=330, Percent_Identity=32.4242424242424, Blast_Score=130, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI115532424, Length=324, Percent_Identity=30.2469135802469, Blast_Score=125, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI71982035, Length=352, Percent_Identity=29.8295454545455, Blast_Score=118, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI71982038, Length=354, Percent_Identity=29.6610169491525, Blast_Score=118, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI17539532, Length=319, Percent_Identity=26.0188087774295, Blast_Score=106, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6319493, Length=310, Percent_Identity=30, Blast_Score=105, Evalue=1e-23,
Organism=Drosophila melanogaster, GI21356223, Length=320, Percent_Identity=27.8125, Blast_Score=126, Evalue=2e-29,
Organism=Drosophila melanogaster, GI19923002, Length=321, Percent_Identity=28.9719626168224, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24158427, Length=278, Percent_Identity=24.1007194244604, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: =5.1.3.2 [H]

Molecular weight: Translated: 35109; Mature: 35109

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITKSNILITGGAGFIGSSLANELLPQNKITVIDNLSMGDFNNLHETSNLTKILGDVTDK
CCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
NLLVKVLEENDFDYIFHLAAIASVADSVARPYETHQVNFDSTMTLLEILRQNKKSLKRFV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHHHHHHHHHHHHHHHH
FSSSAAVYGDEPTLPKQEEGTIRPLTPYAIDKFASEKMTMIYNNLYDVPTSATRFFNVYG
HCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEC
PNQNPNSPYSGFISILVDRLRENTELTIFGDGEQSRDFVYIEDVIQALLLIATSEQSFGE
CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCHHHHH
VYNVGTGVKNSINDLTKFAQKFTNKELSIKFDDVRQGDIKDSVSDISKLKDIGYSPKFDL
HHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCH
SNGMKKYLNYEFK
HHHHHHHCCCCCC
>Mature Secondary Structure
MITKSNILITGGAGFIGSSLANELLPQNKITVIDNLSMGDFNNLHETSNLTKILGDVTDK
CCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
NLLVKVLEENDFDYIFHLAAIASVADSVARPYETHQVNFDSTMTLLEILRQNKKSLKRFV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHHHHHHHHHHHHHHHH
FSSSAAVYGDEPTLPKQEEGTIRPLTPYAIDKFASEKMTMIYNNLYDVPTSATRFFNVYG
HCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEC
PNQNPNSPYSGFISILVDRLRENTELTIFGDGEQSRDFVYIEDVIQALLLIATSEQSFGE
CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCHHHHH
VYNVGTGVKNSINDLTKFAQKFTNKELSIKFDDVRQGDIKDSVSDISKLKDIGYSPKFDL
HHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCH
SNGMKKYLNYEFK
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]