Definition Methanocaldococcus jannaschii DSM 2661 chromosome, complete genome.
Accession NC_000909
Length 1,664,970

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The map label for this gene is rpe

Identifier: 15668861

GI number: 15668861

Start: 606274

End: 606978

Strand: Reverse

Name: rpe

Synonym: MJ0680

Alternate gene names: 15668861

Gene position: 606978-606274 (Counterclockwise)

Preceding gene: 15668862

Following gene: 15668860

Centisome position: 36.46

GC content: 34.18

Gene sequence:

>705_bases
ATGATTAAAATTGGAGCTTCAATACTATCTGCTGATTTTGGGCATTTAAGGGAGGAGATTAAAAAGGCAGAGGAAGCAGG
GGTTGATTTCTTTCATGTTGATATGATGGACGGTCACTTTGTCCCAAATATAAGCATGGGAATTGGAATTGCAAAGCATG
TTAAAAAGCTAACAGAACTCCCAGTAGAAGTGCATTTAATGGTGGAAAATGTTGATTTATTTGTTAATGAATTTGAGGAG
ATGGATTATATAACATTCCACATAGAGGCGGTTAAGTTTCCTTTTAGAATTATAAATAGGATTAAAAGTATTGGAGCTAA
GCCGATAGTTGCTTTAAACCCGGCAACACCTTTGGATGCAATAGAGTATATTTTGGGAGATGTTTATGCTGTTTTAGTTA
TGACTGTTGAACCTGGCTTTTCTGGACAAAAGTTTATTCCAGTGATGACAAAGAAGATTAGAAAGTTAAAGAGCATGATT
GTTGAAAATGGATATGATACAAAAATATTCGTTGATGGAGGAATAAATGTTGAAACAGCTCCATTGGCAGTAAAAGCTGG
AGCTGATGTTTTAGTTGCTGCATCTGCAATATTTGGAAAGGATGATGTTAAAACAGCCGTTAAAAACTTAAGAGAGGCAG
CTTTAGAAGCTTTAAACAAAGATTTTTTAACTAAAAGCTTTAATTCAAATGAAGAAAAACAGTAA

Upstream 100 bases:

>100_bases
AGAATAATGTTGCATTCCATGGAAAGGCTCCAAATGAAGAACAATTAAAACAAGCATTAGAAGAATTAAGTGAATAAAAT
TTTATTTTTTGGTGATTTAA

Downstream 100 bases:

>100_bases
AAACAAAAATAATAAATTAATTATTTTGGGTGAAAAATCATGGTTAAGTTGAGTGGAGTTTATAAGGGGATGAGGAAAGG
GTATGGAGAAACATTGATAG

Product: pentose-5-phosphate-3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MIKIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTELPVEVHLMVENVDLFVNEFEE
MDYITFHIEAVKFPFRIINRIKSIGAKPIVALNPATPLDAIEYILGDVYAVLVMTVEPGFSGQKFIPVMTKKIRKLKSMI
VENGYDTKIFVDGGINVETAPLAVKAGADVLVAASAIFGKDDVKTAVKNLREAALEALNKDFLTKSFNSNEEKQ

Sequences:

>Translated_234_residues
MIKIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTELPVEVHLMVENVDLFVNEFEE
MDYITFHIEAVKFPFRIINRIKSIGAKPIVALNPATPLDAIEYILGDVYAVLVMTVEPGFSGQKFIPVMTKKIRKLKSMI
VENGYDTKIFVDGGINVETAPLAVKAGADVLVAASAIFGKDDVKTAVKNLREAALEALNKDFLTKSFNSNEEKQ
>Mature_234_residues
MIKIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTELPVEVHLMVENVDLFVNEFEE
MDYITFHIEAVKFPFRIINRIKSIGAKPIVALNPATPLDAIEYILGDVYAVLVMTVEPGFSGQKFIPVMTKKIRKLKSMI
VENGYDTKIFVDGGINVETAPLAVKAGADVLVAASAIFGKDDVKTAVKNLREAALEALNKDFLTKSFNSNEEKQ

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family

Homologues:

Organism=Homo sapiens, GI40385883, Length=228, Percent_Identity=34.6491228070175, Blast_Score=134, Evalue=8e-32,
Organism=Homo sapiens, GI219879828, Length=228, Percent_Identity=33.7719298245614, Blast_Score=128, Evalue=5e-30,
Organism=Homo sapiens, GI24307923, Length=182, Percent_Identity=29.1208791208791, Blast_Score=78, Evalue=5e-15,
Organism=Escherichia coli, GI1789788, Length=212, Percent_Identity=41.5094339622642, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1790523, Length=201, Percent_Identity=37.3134328358209, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1790754, Length=206, Percent_Identity=30.0970873786408, Blast_Score=108, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17552948, Length=224, Percent_Identity=35.2678571428571, Blast_Score=123, Evalue=9e-29,
Organism=Saccharomyces cerevisiae, GI6322341, Length=236, Percent_Identity=36.864406779661, Blast_Score=147, Evalue=1e-36,
Organism=Drosophila melanogaster, GI24586301, Length=213, Percent_Identity=36.6197183098592, Blast_Score=138, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPE_METJA (Q58093)

Other databases:

- EMBL:   L77117
- PIR:   H64384
- RefSeq:   NP_247664.1
- ProteinModelPortal:   Q58093
- SMR:   Q58093
- GeneID:   1451546
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0680
- NMPDR:   fig|243232.1.peg.701
- TIGR:   MJ0680
- HOGENOM:   HBG571751
- OMA:   CRAIEAQ
- ProtClustDB:   CLSK876291
- BioCyc:   MJAN243232:MJ_0680-MONOMER
- BRENDA:   5.1.3.1
- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR11749
- PIRSF:   PIRSF001461
- TIGRFAMs:   TIGR01163

Pfam domain/function: PF00834 Ribul_P_3_epim; SSF51366 RibP_bind_barrel

EC number: =5.1.3.1

Molecular weight: Translated: 25838; Mature: 25838

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTEL
CEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHC
PVEVHLMVENVDLFVNEFEEMDYITFHIEAVKFPFRIINRIKSIGAKPIVALNPATPLDA
CEEEEEEEEHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHH
IEYILGDVYAVLVMTVEPGFSGQKFIPVMTKKIRKLKSMIVENGYDTKIFVDGGINVETA
HHHHHHHHHHHHHEEECCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEC
PLAVKAGADVLVAASAIFGKDDVKTAVKNLREAALEALNKDFLTKSFNSNEEKQ
CEEEECCCCCEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIKIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTEL
CEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHC
PVEVHLMVENVDLFVNEFEEMDYITFHIEAVKFPFRIINRIKSIGAKPIVALNPATPLDA
CEEEEEEEEHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHH
IEYILGDVYAVLVMTVEPGFSGQKFIPVMTKKIRKLKSMIVENGYDTKIFVDGGINVETA
HHHHHHHHHHHHHEEECCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEC
PLAVKAGADVLVAASAIFGKDDVKTAVKNLREAALEALNKDFLTKSFNSNEEKQ
CEEEECCCCCEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087