Definition | Methanocaldococcus jannaschii DSM 2661 chromosome, complete genome. |
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Accession | NC_000909 |
Length | 1,664,970 |
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The map label for this gene is rpe
Identifier: 15668861
GI number: 15668861
Start: 606274
End: 606978
Strand: Reverse
Name: rpe
Synonym: MJ0680
Alternate gene names: 15668861
Gene position: 606978-606274 (Counterclockwise)
Preceding gene: 15668862
Following gene: 15668860
Centisome position: 36.46
GC content: 34.18
Gene sequence:
>705_bases ATGATTAAAATTGGAGCTTCAATACTATCTGCTGATTTTGGGCATTTAAGGGAGGAGATTAAAAAGGCAGAGGAAGCAGG GGTTGATTTCTTTCATGTTGATATGATGGACGGTCACTTTGTCCCAAATATAAGCATGGGAATTGGAATTGCAAAGCATG TTAAAAAGCTAACAGAACTCCCAGTAGAAGTGCATTTAATGGTGGAAAATGTTGATTTATTTGTTAATGAATTTGAGGAG ATGGATTATATAACATTCCACATAGAGGCGGTTAAGTTTCCTTTTAGAATTATAAATAGGATTAAAAGTATTGGAGCTAA GCCGATAGTTGCTTTAAACCCGGCAACACCTTTGGATGCAATAGAGTATATTTTGGGAGATGTTTATGCTGTTTTAGTTA TGACTGTTGAACCTGGCTTTTCTGGACAAAAGTTTATTCCAGTGATGACAAAGAAGATTAGAAAGTTAAAGAGCATGATT GTTGAAAATGGATATGATACAAAAATATTCGTTGATGGAGGAATAAATGTTGAAACAGCTCCATTGGCAGTAAAAGCTGG AGCTGATGTTTTAGTTGCTGCATCTGCAATATTTGGAAAGGATGATGTTAAAACAGCCGTTAAAAACTTAAGAGAGGCAG CTTTAGAAGCTTTAAACAAAGATTTTTTAACTAAAAGCTTTAATTCAAATGAAGAAAAACAGTAA
Upstream 100 bases:
>100_bases AGAATAATGTTGCATTCCATGGAAAGGCTCCAAATGAAGAACAATTAAAACAAGCATTAGAAGAATTAAGTGAATAAAAT TTTATTTTTTGGTGATTTAA
Downstream 100 bases:
>100_bases AAACAAAAATAATAAATTAATTATTTTGGGTGAAAAATCATGGTTAAGTTGAGTGGAGTTTATAAGGGGATGAGGAAAGG GTATGGAGAAACATTGATAG
Product: pentose-5-phosphate-3-epimerase
Products: NA
Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E
Number of amino acids: Translated: 234; Mature: 234
Protein sequence:
>234_residues MIKIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTELPVEVHLMVENVDLFVNEFEE MDYITFHIEAVKFPFRIINRIKSIGAKPIVALNPATPLDAIEYILGDVYAVLVMTVEPGFSGQKFIPVMTKKIRKLKSMI VENGYDTKIFVDGGINVETAPLAVKAGADVLVAASAIFGKDDVKTAVKNLREAALEALNKDFLTKSFNSNEEKQ
Sequences:
>Translated_234_residues MIKIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTELPVEVHLMVENVDLFVNEFEE MDYITFHIEAVKFPFRIINRIKSIGAKPIVALNPATPLDAIEYILGDVYAVLVMTVEPGFSGQKFIPVMTKKIRKLKSMI VENGYDTKIFVDGGINVETAPLAVKAGADVLVAASAIFGKDDVKTAVKNLREAALEALNKDFLTKSFNSNEEKQ >Mature_234_residues MIKIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTELPVEVHLMVENVDLFVNEFEE MDYITFHIEAVKFPFRIINRIKSIGAKPIVALNPATPLDAIEYILGDVYAVLVMTVEPGFSGQKFIPVMTKKIRKLKSMI VENGYDTKIFVDGGINVETAPLAVKAGADVLVAASAIFGKDDVKTAVKNLREAALEALNKDFLTKSFNSNEEKQ
Specific function: Unknown
COG id: COG0036
COG function: function code G; Pentose-5-phosphate-3-epimerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribulose-phosphate 3-epimerase family
Homologues:
Organism=Homo sapiens, GI40385883, Length=228, Percent_Identity=34.6491228070175, Blast_Score=134, Evalue=8e-32, Organism=Homo sapiens, GI219879828, Length=228, Percent_Identity=33.7719298245614, Blast_Score=128, Evalue=5e-30, Organism=Homo sapiens, GI24307923, Length=182, Percent_Identity=29.1208791208791, Blast_Score=78, Evalue=5e-15, Organism=Escherichia coli, GI1789788, Length=212, Percent_Identity=41.5094339622642, Blast_Score=162, Evalue=2e-41, Organism=Escherichia coli, GI1790523, Length=201, Percent_Identity=37.3134328358209, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI1790754, Length=206, Percent_Identity=30.0970873786408, Blast_Score=108, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17552948, Length=224, Percent_Identity=35.2678571428571, Blast_Score=123, Evalue=9e-29, Organism=Saccharomyces cerevisiae, GI6322341, Length=236, Percent_Identity=36.864406779661, Blast_Score=147, Evalue=1e-36, Organism=Drosophila melanogaster, GI24586301, Length=213, Percent_Identity=36.6197183098592, Blast_Score=138, Evalue=3e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RPE_METJA (Q58093)
Other databases:
- EMBL: L77117 - PIR: H64384 - RefSeq: NP_247664.1 - ProteinModelPortal: Q58093 - SMR: Q58093 - GeneID: 1451546 - GenomeReviews: L77117_GR - KEGG: mja:MJ_0680 - NMPDR: fig|243232.1.peg.701 - TIGR: MJ0680 - HOGENOM: HBG571751 - OMA: CRAIEAQ - ProtClustDB: CLSK876291 - BioCyc: MJAN243232:MJ_0680-MONOMER - BRENDA: 5.1.3.1 - InterPro: IPR013785 - InterPro: IPR000056 - InterPro: IPR011060 - Gene3D: G3DSA:3.20.20.70 - PANTHER: PTHR11749 - PIRSF: PIRSF001461 - TIGRFAMs: TIGR01163
Pfam domain/function: PF00834 Ribul_P_3_epim; SSF51366 RibP_bind_barrel
EC number: =5.1.3.1
Molecular weight: Translated: 25838; Mature: 25838
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: PS01085 RIBUL_P_3_EPIMER_1; PS01086 RIBUL_P_3_EPIMER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTEL CEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHC PVEVHLMVENVDLFVNEFEEMDYITFHIEAVKFPFRIINRIKSIGAKPIVALNPATPLDA CEEEEEEEEHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHH IEYILGDVYAVLVMTVEPGFSGQKFIPVMTKKIRKLKSMIVENGYDTKIFVDGGINVETA HHHHHHHHHHHHHEEECCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEC PLAVKAGADVLVAASAIFGKDDVKTAVKNLREAALEALNKDFLTKSFNSNEEKQ CEEEECCCCCEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MIKIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTEL CEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHC PVEVHLMVENVDLFVNEFEEMDYITFHIEAVKFPFRIINRIKSIGAKPIVALNPATPLDA CEEEEEEEEHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHH IEYILGDVYAVLVMTVEPGFSGQKFIPVMTKKIRKLKSMIVENGYDTKIFVDGGINVETA HHHHHHHHHHHHHEEECCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEC PLAVKAGADVLVAASAIFGKDDVKTAVKNLREAALEALNKDFLTKSFNSNEEKQ CEEEECCCCCEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087