Definition | Methanocaldococcus jannaschii DSM 2661 chromosome, complete genome. |
---|---|
Accession | NC_000909 |
Length | 1,664,970 |
Click here to switch to the map view.
The map label for this gene is 15668730
Identifier: 15668730
GI number: 15668730
Start: 486008
End: 487105
Strand: Reverse
Name: 15668730
Synonym: MJ0550
Alternate gene names: NA
Gene position: 487105-486008 (Counterclockwise)
Preceding gene: 15668731
Following gene: 15668728
Centisome position: 29.26
GC content: 28.78
Gene sequence:
>1098_bases ATGAACCAAATTATTAATGATAATTATAGGGAATTCTTAAAAAAATTAAGAGAGAGACATTTAAAAAAGAGAAAAGTTAA AGATAAAAATAAACCTATTGCTGTGTGGATGCAAGATGATATATATAGAGATTTCAGCATAGGAAAGTCCCTTACAATAA TTTTAAGGACAGAAGGCTGTTATTATGCAAAAGAAGGAGGCTGTTTAATGTGTTCCTATTTAATGGACTCCTCTCCTGAA AAAATAACTGCTGAAAATATAATAAATCAGTTTAATTATGCGATTGAGAAATATAAAGAAAAAATAAAAGATTTAAAAGA TTTCAGCGTTAAAATATTCACTTCTGGAAGTTTTTTGGATGATAGAGAAGTTCCTAAAGAGGCAAGAAATTATATTTTCA AAAAACTTAGCGAATTTGATAATTTAAAAGAAGTGGCTATTGAATCAAGACCTGAATTTATTGATGAAGACAAATTAAAC GAAATTAGAAAATATTTGGATGTTAATGTTGAAATTGGGGTTGGAATAGAAAGTTTTAATGAAGAAATTAGAGAAAAAGC AATTAACAAAGGAATAACAAATGAACAAATAATTAGAGCTATAGAATTGGCTAAAAACTACAACATTGGGATAAAAGCTT ATTTATTAATAAAACCTCTATTCATAACTGAAAAAGAGGCAATTTATGACTCAATATCTTCAGCAAATAAGTGTATAGAG TTGGGATGTTCAAGAATATCCTTTTGCCCAGCTACTGTGCATAAAGGTAGTGTGATGGAATTCTTTTTCAACAAAAATCA ATACCGCCCTCCATTTCTATGGAGTATAATTGAGATACTAAAAGAGGTTAAAAAAAGCAATCCAAAGGCATTAATTATGT GTGATACATCAGGAGTAGGAAGTGAAAGAGGGGCTCACAACCTTTATAACTGCAAGTGCAACAAATTGATTAAAGAAAGG TTAGAGAGATTCACTTTGACACAGGATATAAATGTTTTAAATGTTGAATGTGAATGTAAAAATATATGGAATGCATATAT CGAAGTTGAAAATAAAAATATAGTTCCATTAGGGGATGAAAGAAAACTCCTATTATAA
Upstream 100 bases:
>100_bases TGATAAGCTTATATGCAAAGTTTGGAAAGGGTAGGATGGCAGATTTTGTTGAAAACTATGGGATTGAAAACTTAAGAAAT AACATAAAAGAGTTGATAAA
Downstream 100 bases:
>100_bases AAATTTATTCTGGAATCTGTCCTCCTGGAACCATAACACTTAACTTAACTTGTTTAACTCCTTTTAAGGCTGTTAATCTA TCTGTTAATTCCCTAATCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 365; Mature: 365
Protein sequence:
>365_residues MNQIINDNYREFLKKLRERHLKKRKVKDKNKPIAVWMQDDIYRDFSIGKSLTIILRTEGCYYAKEGGCLMCSYLMDSSPE KITAENIINQFNYAIEKYKEKIKDLKDFSVKIFTSGSFLDDREVPKEARNYIFKKLSEFDNLKEVAIESRPEFIDEDKLN EIRKYLDVNVEIGVGIESFNEEIREKAINKGITNEQIIRAIELAKNYNIGIKAYLLIKPLFITEKEAIYDSISSANKCIE LGCSRISFCPATVHKGSVMEFFFNKNQYRPPFLWSIIEILKEVKKSNPKALIMCDTSGVGSERGAHNLYNCKCNKLIKER LERFTLTQDINVLNVECECKNIWNAYIEVENKNIVPLGDERKLLL
Sequences:
>Translated_365_residues MNQIINDNYREFLKKLRERHLKKRKVKDKNKPIAVWMQDDIYRDFSIGKSLTIILRTEGCYYAKEGGCLMCSYLMDSSPE KITAENIINQFNYAIEKYKEKIKDLKDFSVKIFTSGSFLDDREVPKEARNYIFKKLSEFDNLKEVAIESRPEFIDEDKLN EIRKYLDVNVEIGVGIESFNEEIREKAINKGITNEQIIRAIELAKNYNIGIKAYLLIKPLFITEKEAIYDSISSANKCIE LGCSRISFCPATVHKGSVMEFFFNKNQYRPPFLWSIIEILKEVKKSNPKALIMCDTSGVGSERGAHNLYNCKCNKLIKER LERFTLTQDINVLNVECECKNIWNAYIEVENKNIVPLGDERKLLL >Mature_365_residues MNQIINDNYREFLKKLRERHLKKRKVKDKNKPIAVWMQDDIYRDFSIGKSLTIILRTEGCYYAKEGGCLMCSYLMDSSPE KITAENIINQFNYAIEKYKEKIKDLKDFSVKIFTSGSFLDDREVPKEARNYIFKKLSEFDNLKEVAIESRPEFIDEDKLN EIRKYLDVNVEIGVGIESFNEEIREKAINKGITNEQIIRAIELAKNYNIGIKAYLLIKPLFITEKEAIYDSISSANKCIE LGCSRISFCPATVHKGSVMEFFFNKNQYRPPFLWSIIEILKEVKKSNPKALIMCDTSGVGSERGAHNLYNCKCNKLIKER LERFTLTQDINVLNVECECKNIWNAYIEVENKNIVPLGDERKLLL
Specific function: Unknown
COG id: COG1244
COG function: function code R; Predicted Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y550_METJA (Q57970)
Other databases:
- EMBL: L77117 - PIR: F64368 - RefSeq: NP_247529.1 - ProteinModelPortal: Q57970 - GeneID: 1451415 - GenomeReviews: L77117_GR - KEGG: mja:MJ_0550 - NMPDR: fig|243232.1.peg.566 - TIGR: MJ0550 - HOGENOM: HBG546268 - OMA: KRGPHNC - ProtClustDB: CLSK876244 - BioCyc: MJAN243232:MJ_0550-MONOMER - InterPro: IPR005909 - InterPro: IPR006638 - InterPro: IPR007197 - PIRSF: PIRSF004954 - SMART: SM00729 - TIGRFAMs: TIGR01210
Pfam domain/function: PF04055 Radical_SAM
EC number: NA
Molecular weight: Translated: 42519; Mature: 42519
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQIINDNYREFLKKLRERHLKKRKVKDKNKPIAVWMQDDIYRDFSIGKSLTIILRTEGC CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCCCCEEEEEEEECCE YYAKEGGCLMCSYLMDSSPEKITAENIINQFNYAIEKYKEKIKDLKDFSVKIFTSGSFLD EEECCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC DREVPKEARNYIFKKLSEFDNLKEVAIESRPEFIDEDKLNEIRKYLDVNVEIGVGIESFN CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHH EEIREKAINKGITNEQIIRAIELAKNYNIGIKAYLLIKPLFITEKEAIYDSISSANKCIE HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEHHCCCHHHHHHHHHHHHHHHH LGCSRISFCPATVHKGSVMEFFFNKNQYRPPFLWSIIEILKEVKKSNPKALIMCDTSGVG HCCHHHCCCCHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC SERGAHNLYNCKCNKLIKERLERFTLTQDINVLNVECECKNIWNAYIEVENKNIVPLGDE CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHCEEEEEECCCEEECCCCC RKLLL CCCCC >Mature Secondary Structure MNQIINDNYREFLKKLRERHLKKRKVKDKNKPIAVWMQDDIYRDFSIGKSLTIILRTEGC CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCCCCEEEEEEEECCE YYAKEGGCLMCSYLMDSSPEKITAENIINQFNYAIEKYKEKIKDLKDFSVKIFTSGSFLD EEECCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC DREVPKEARNYIFKKLSEFDNLKEVAIESRPEFIDEDKLNEIRKYLDVNVEIGVGIESFN CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHH EEIREKAINKGITNEQIIRAIELAKNYNIGIKAYLLIKPLFITEKEAIYDSISSANKCIE HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEHHCCCHHHHHHHHHHHHHHHH LGCSRISFCPATVHKGSVMEFFFNKNQYRPPFLWSIIEILKEVKKSNPKALIMCDTSGVG HCCHHHCCCCHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC SERGAHNLYNCKCNKLIKERLERFTLTQDINVLNVECECKNIWNAYIEVENKNIVPLGDE CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHCEEEEEECCCEEECCCCC RKLLL CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087