Definition | Methanocaldococcus jannaschii DSM 2661 chromosome, complete genome. |
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Accession | NC_000909 |
Length | 1,664,970 |
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The map label for this gene is 15668728
Identifier: 15668728
GI number: 15668728
Start: 484585
End: 485466
Strand: Reverse
Name: 15668728
Synonym: MJ0548
Alternate gene names: NA
Gene position: 485466-484585 (Counterclockwise)
Preceding gene: 15668730
Following gene: 15668727
Centisome position: 29.16
GC content: 30.27
Gene sequence:
>882_bases GTGAGTTTAATTATTTGCTACTATGGTAAAAATGGGGCTGTAATTGGAGGAGATAGAAGGCAAATATTTTTTAGAGGTAG TGAGGAGAATAGAAAGATTTTAGAAGAAAAACTATACAGTGGGGAGATAAAATCTGAAGAGGAACTTTATAAATTGGCAG AAAAGCTTAACATTAAAATTATAATTGAAGATGATAGGGAAAAAGTTAGAAAGATATCTGATTCAGTAGTATGTGGAGAA GTTAGGAGCTTAGGAATTGATGCAAAGAGAAGGAGGGTTTATGCAACAAAAGGGAAATGTGCCATTGTTGATATATTAAA CGACACAGTTACAAATCAAACAATAAAAGAAGGTTTTGGAATTGTAGTTCTTGGAAACAGATTCTTAAAAAAGAAAGCTG AGGAGGAATTAAAAAGAACAGCTAAATTATTCCCAATGATGCCTATACAACAGATAGAAGATGCAATAAAAGAAATTTTT GAGAAATTAAAGTGGCATCCTACAGTGAGTAAAGAGTATGACATTTACAGTGTGAATAAATATGAAAAGAACTTTGAGGA AGTTATTAAAAAGGATATTGAGAGCCTATTTAAATATAGGGAACAGTTGAGGAAACAACTCATAGATTTTGGAAAGGTTA TGAGTATAGTCAATAAAATTGTAAAAAATGGAGAAATTGGAGTTATTAAAGATGGAAAACTTCACTTATATGATGATTAT ATAGCTATCGATAAGATAGACCCAAATCCAAAGGTATTTAAAGTTGTGGATGTGGAAGGCAACTTTAAAGATGGTGATAT AGTAGTTATTGAAAATGGAGATATGAAAATAAAAGGGACTAATGAGAAAGTAACAACCAAATATATCATAATTCATAAAT AA
Upstream 100 bases:
>100_bases TTTATTTTCAAACTAACAAATATTACTATTTAATAACTAATATATAAGATTAACGATAATAATAATACTAACTAATATTA TTAGTCTAAGGGGTGAGAGA
Downstream 100 bases:
>100_bases CATAGTCCTAAAGTTCAATAAGCAAATGTTGTTAGATAACCTTATTCAATTAATTAATGATGTAATGTTTTTGAAGATAA GCGTGTCCTAATATTAAACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MSLIICYYGKNGAVIGGDRRQIFFRGSEENRKILEEKLYSGEIKSEEELYKLAEKLNIKIIIEDDREKVRKISDSVVCGE VRSLGIDAKRRRVYATKGKCAIVDILNDTVTNQTIKEGFGIVVLGNRFLKKKAEEELKRTAKLFPMMPIQQIEDAIKEIF EKLKWHPTVSKEYDIYSVNKYEKNFEEVIKKDIESLFKYREQLRKQLIDFGKVMSIVNKIVKNGEIGVIKDGKLHLYDDY IAIDKIDPNPKVFKVVDVEGNFKDGDIVVIENGDMKIKGTNEKVTTKYIIIHK
Sequences:
>Translated_293_residues MSLIICYYGKNGAVIGGDRRQIFFRGSEENRKILEEKLYSGEIKSEEELYKLAEKLNIKIIIEDDREKVRKISDSVVCGE VRSLGIDAKRRRVYATKGKCAIVDILNDTVTNQTIKEGFGIVVLGNRFLKKKAEEELKRTAKLFPMMPIQQIEDAIKEIF EKLKWHPTVSKEYDIYSVNKYEKNFEEVIKKDIESLFKYREQLRKQLIDFGKVMSIVNKIVKNGEIGVIKDGKLHLYDDY IAIDKIDPNPKVFKVVDVEGNFKDGDIVVIENGDMKIKGTNEKVTTKYIIIHK >Mature_292_residues SLIICYYGKNGAVIGGDRRQIFFRGSEENRKILEEKLYSGEIKSEEELYKLAEKLNIKIIIEDDREKVRKISDSVVCGEV RSLGIDAKRRRVYATKGKCAIVDILNDTVTNQTIKEGFGIVVLGNRFLKKKAEEELKRTAKLFPMMPIQQIEDAIKEIFE KLKWHPTVSKEYDIYSVNKYEKNFEEVIKKDIESLFKYREQLRKQLIDFGKVMSIVNKIVKNGEIGVIKDGKLHLYDDYI AIDKIDPNPKVFKVVDVEGNFKDGDIVVIENGDMKIKGTNEKVTTKYIIIHK
Specific function: Unknown
COG id: COG4079
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y548_METJA (Q57968)
Other databases:
- EMBL: L77117 - PIR: D64368 - RefSeq: NP_247527.1 - ProteinModelPortal: Q57968 - GeneID: 1451413 - GenomeReviews: L77117_GR - KEGG: mja:MJ_0548 - NMPDR: fig|243232.1.peg.564 - TIGR: MJ0548 - HOGENOM: HBG539080 - OMA: IGYYGKN - ProtClustDB: CLSK876243 - BioCyc: MJAN243232:MJ_0548-MONOMER - InterPro: IPR016754 - PIRSF: PIRSF019262
Pfam domain/function: PF09894 DUF2121
EC number: NA
Molecular weight: Translated: 33878; Mature: 33747
Theoretical pI: Translated: 9.38; Mature: 9.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLIICYYGKNGAVIGGDRRQIFFRGSEENRKILEEKLYSGEIKSEEELYKLAEKLNIKI CEEEEEEECCCCCEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEE IIEDDREKVRKISDSVVCGEVRSLGIDAKRRRVYATKGKCAIVDILNDTVTNQTIKEGFG EEECCHHHHHHHHCCCEEHHHHHCCCCHHHCEEEEECCCEEEEEECCCHHHHHHHHCCCC IVVLGNRFLKKKAEEELKRTAKLFPMMPIQQIEDAIKEIFEKLKWHPTVSKEYDIYSVNK EEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHH YEKNFEEVIKKDIESLFKYREQLRKQLIDFGKVMSIVNKIVKNGEIGVIKDGKLHLYDDY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECE IAIDKIDPNPKVFKVVDVEGNFKDGDIVVIENGDMKIKGTNEKVTTKYIIIHK EEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCEEEEECCCEEEEEEEEEEC >Mature Secondary Structure SLIICYYGKNGAVIGGDRRQIFFRGSEENRKILEEKLYSGEIKSEEELYKLAEKLNIKI EEEEEEECCCCCEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEE IIEDDREKVRKISDSVVCGEVRSLGIDAKRRRVYATKGKCAIVDILNDTVTNQTIKEGFG EEECCHHHHHHHHCCCEEHHHHHCCCCHHHCEEEEECCCEEEEEECCCHHHHHHHHCCCC IVVLGNRFLKKKAEEELKRTAKLFPMMPIQQIEDAIKEIFEKLKWHPTVSKEYDIYSVNK EEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHH YEKNFEEVIKKDIESLFKYREQLRKQLIDFGKVMSIVNKIVKNGEIGVIKDGKLHLYDDY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECE IAIDKIDPNPKVFKVVDVEGNFKDGDIVVIENGDMKIKGTNEKVTTKYIIIHK EEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCEEEEECCCEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087