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The map label for this gene is rpl10e

Identifier: 15668723

GI number: 15668723

Start: 481257

End: 481781

Strand: Reverse

Name: rpl10e

Synonym: MJ0543

Alternate gene names: 15668723

Gene position: 481781-481257 (Counterclockwise)

Preceding gene: 15668724

Following gene: 15668722

Centisome position: 28.94

GC content: 37.71

Gene sequence:

>525_bases
ATGGCTTCTTTAAGACCAAACAGATGTTACAGAGATGTAGATAAACCACCATACACAAGAAAGGAGTATGTTAAAGGGGT
TCCACAACCAAAAGTAGTTCATTTCATAATGGGTAACTTATCAGCAGAATTCCCAGTTAAGGTTAATTTAGTAGCTACAA
GACCAATCCAAATAAGACATAACGCATTAGAAGCTGCAAGAGTTGCCGCAAACAAATATTTAACAAAGATGTGCGGTAGA
ATGGGTTACAAATTCCAAATTAGAGTTTATCCACACCAAATATTGAGAGAGCACAAGATGGCTACTGGAGCTGGGGCAGA
TAGAATTTCAGATGGAATGAGATTGGCATTTGGAAAACCAATTGGAACAGCTGCAAGAGTTAAGGAAGGACAGGCAATCT
TAACAGTATGGGTAAACCCAGACAAATTCCCAGCTGCAAAGGAAGCTTTAAGAAGAGCTGCAATGAAATTACCAGTTCCA
TGTAGAATAGTTATTGAGCAAGGAAAAGAATTGCTTAAATTATAA

Upstream 100 bases:

>100_bases
AAAATATTAGCATCACAATAAATTTTATATATTGGGAATTGAAAACACACATAGTCCTTCTCTTTATCTATAAAACGAAA
CAGCCAAAATAGGTGATGAT

Downstream 100 bases:

>100_bases
TTATGAAACTTTTTTTAATTTTTTATAACATTTTCACTTGTAATAACTCTACTATTTTATTTATAATATTATCATTCAAA
TATTTAAATTTATTTTAAAA

Product: 50S ribosomal protein L10e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MASLRPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMGNLSAEFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGR
MGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKPIGTAARVKEGQAILTVWVNPDKFPAAKEALRRAAMKLPVP
CRIVIEQGKELLKL

Sequences:

>Translated_174_residues
MASLRPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMGNLSAEFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGR
MGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKPIGTAARVKEGQAILTVWVNPDKFPAAKEALRRAAMKLPVP
CRIVIEQGKELLKL
>Mature_173_residues
ASLRPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMGNLSAEFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGRM
GYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKPIGTAARVKEGQAILTVWVNPDKFPAAKEALRRAAMKLPVPC
RIVIEQGKELLKL

Specific function: Unknown

COG id: COG0197

COG function: function code J; Ribosomal protein L16/L10E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10e family

Homologues:

Organism=Homo sapiens, GI18152783, Length=166, Percent_Identity=42.7710843373494, Blast_Score=133, Evalue=8e-32,
Organism=Homo sapiens, GI223890243, Length=157, Percent_Identity=43.312101910828, Blast_Score=131, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI17533037, Length=157, Percent_Identity=40.1273885350318, Blast_Score=124, Evalue=3e-29,
Organism=Saccharomyces cerevisiae, GI6323104, Length=166, Percent_Identity=42.1686746987952, Blast_Score=128, Evalue=4e-31,
Organism=Drosophila melanogaster, GI221513696, Length=158, Percent_Identity=44.9367088607595, Blast_Score=132, Evalue=2e-31,
Organism=Drosophila melanogaster, GI221513692, Length=158, Percent_Identity=44.9367088607595, Blast_Score=132, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL10_METJA (Q57963)

Other databases:

- EMBL:   L77117
- PIR:   G64367
- RefSeq:   NP_247522.1
- ProteinModelPortal:   Q57963
- SMR:   Q57963
- GeneID:   1451408
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0543
- NMPDR:   fig|243232.1.peg.559
- TIGR:   MJ0543
- HOGENOM:   HBG512729
- OMA:   YTRREYI
- ProtClustDB:   PRK04199
- BioCyc:   MJAN243232:MJ_0543-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00448
- InterPro:   IPR001197
- InterPro:   IPR016180
- InterPro:   IPR022981
- InterPro:   IPR018255
- PANTHER:   PTHR11726
- PIRSF:   PIRSF005590
- TIGRFAMs:   TIGR00279

Pfam domain/function: PF00252 Ribosomal_L16; SSF54686 Ribosomal_L10e/L16

EC number: NA

Molecular weight: Translated: 19577; Mature: 19445

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: PS01257 RIBOSOMAL_L10E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLRPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMGNLSAEFPVKVNLVATRPIQIRH
CCCCCCCCHHHCCCCCCCCHHHHHCCCCCCHHHHEECCCCCCCCCEEEEEEEECCEEEHH
NALEAARVAANKYLTKMCGRMGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKP
HHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCHHHHCCCCEEEECCC
IGTAARVKEGQAILTVWVNPDKFPAAKEALRRAAMKLPVPCRIVIEQGKELLKL
CCCHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHCC
>Mature Secondary Structure 
ASLRPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMGNLSAEFPVKVNLVATRPIQIRH
CCCCCCCHHHCCCCCCCCHHHHHCCCCCCHHHHEECCCCCCCCCEEEEEEEECCEEEHH
NALEAARVAANKYLTKMCGRMGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKP
HHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCHHHHCCCCEEEECCC
IGTAARVKEGQAILTVWVNPDKFPAAKEALRRAAMKLPVPCRIVIEQGKELLKL
CCCHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087