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The map label for this gene is 15668619

Identifier: 15668619

GI number: 15668619

Start: 397007

End: 397690

Strand: Reverse

Name: 15668619

Synonym: MJ0443

Alternate gene names: NA

Gene position: 397690-397007 (Counterclockwise)

Preceding gene: 15668620

Following gene: 15668618

Centisome position: 23.89

GC content: 35.82

Gene sequence:

>684_bases
ATGGTGATAATTATGGTTTTTGGAAATATTGGACAAGATAAGAGCATTGAGATTTTAAAGATTCCAAAGGATAGAGTAGG
AGTTTTAATAGGAAAAAAGGGAAATGTTAAAAAAACCATTGAAAAAGAGCTTGGAGTTAAGTTGGAGATTGATGCCGATG
GAACAGTAACCATCTATGGAACAGATAAGCAGAAAGACCCCTTAGCTGTTTGGAAGGCAAGGGATATAGTTAGAGCTATT
GGTAGGGGATTTAATCCAGAAATTGCTCTAAAATTGGTTAGTGATGAGTATGTTTTGGAAGTTATAGATATTGAGGACTA
TGCAAGTTCTGATAACAGCATAAGGAGATTGAAAGGAAGAGTTATTGGTAAAGAAGGAAAGTCAAGAAGATACATAGAGA
GCTTAACTGGAGCTAACGTCTCTGTTTATGGAAACACTGTAGCAATAGTTGGAGAGCATGAGCCAGTTCAGATAGCTAAA
GAGGCTGTTGAGATGCTCTTAAGAGGAGCATCCCATGCAAAGACATATAAATTCTTAGAGAGGGAAAGACAGAAGATTAA
AAGGGCAAGATTTGAGTTATGGAAGAAAAAGAGTGATGTTGATGAGTTATATGAGAAGATGAATCCCAATTATGAAGAGA
TAGAGATTGAAGAAGATGAAGATGAAATAGAGGATGAAGAATAA

Upstream 100 bases:

>100_bases
TATATAACTGGAAAAGAGATAGACCCAATTGATGAAGCGATGATTAAGCAATTGTAAATTAGAATTCTTATTTCTAATTT
TTATTTTATATGGTTTTTAT

Downstream 100 bases:

>100_bases
ATTGGTGATGAAATATGCACTTAGTAGGAGTTTTAGACATTGCCAAAGATATATTAAAAGCAAATAAAAGATTGGCTGAT
AAAAACAGAAAGCTCTTAAA

Product: putative RNA-processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MVIIMVFGNIGQDKSIEILKIPKDRVGVLIGKKGNVKKTIEKELGVKLEIDADGTVTIYGTDKQKDPLAVWKARDIVRAI
GRGFNPEIALKLVSDEYVLEVIDIEDYASSDNSIRRLKGRVIGKEGKSRRYIESLTGANVSVYGNTVAIVGEHEPVQIAK
EAVEMLLRGASHAKTYKFLERERQKIKRARFELWKKKSDVDELYEKMNPNYEEIEIEEDEDEIEDEE

Sequences:

>Translated_227_residues
MVIIMVFGNIGQDKSIEILKIPKDRVGVLIGKKGNVKKTIEKELGVKLEIDADGTVTIYGTDKQKDPLAVWKARDIVRAI
GRGFNPEIALKLVSDEYVLEVIDIEDYASSDNSIRRLKGRVIGKEGKSRRYIESLTGANVSVYGNTVAIVGEHEPVQIAK
EAVEMLLRGASHAKTYKFLERERQKIKRARFELWKKKSDVDELYEKMNPNYEEIEIEEDEDEIEDEE
>Mature_227_residues
MVIIMVFGNIGQDKSIEILKIPKDRVGVLIGKKGNVKKTIEKELGVKLEIDADGTVTIYGTDKQKDPLAVWKARDIVRAI
GRGFNPEIALKLVSDEYVLEVIDIEDYASSDNSIRRLKGRVIGKEGKSRRYIESLTGANVSVYGNTVAIVGEHEPVQIAK
EAVEMLLRGASHAKTYKFLERERQKIKRARFELWKKKSDVDELYEKMNPNYEEIEIEEDEDEIEDEE

Specific function: Unknown

COG id: COG1094

COG function: function code R; Predicted RNA-binding protein (contains KH domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 KH domains

Homologues:

Organism=Caenorhabditis elegans, GI17557644, Length=116, Percent_Identity=32.7586206896552, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17537417, Length=166, Percent_Identity=28.3132530120482, Blast_Score=63, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6319791, Length=150, Percent_Identity=25.3333333333333, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y443_METJA (Q57885)

Other databases:

- EMBL:   L77117
- PIR:   C64355
- RefSeq:   NP_247417.1
- ProteinModelPortal:   Q57885
- SMR:   Q57885
- GeneID:   1451303
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0443
- NMPDR:   fig|243232.1.peg.454
- TIGR:   MJ0443
- HOGENOM:   HBG553777
- OMA:   GRGFSPE
- ProtClustDB:   PRK13763
- BioCyc:   MJAN243232:MJ_0443-MONOMER
- InterPro:   IPR004087
- InterPro:   IPR019964
- InterPro:   IPR004088
- InterPro:   IPR018111
- SMART:   SM00322
- TIGRFAMs:   TIGR03665

Pfam domain/function: PF00013 KH_1

EC number: NA

Molecular weight: Translated: 25840; Mature: 25840

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIIMVFGNIGQDKSIEILKIPKDRVGVLIGKKGNVKKTIEKELGVKLEIDADGTVTIYG
CEEEEEECCCCCCCCEEEEECCCHHEEEEEECCCCHHHHHHHHCCEEEEECCCCEEEEEE
TDKQKDPLAVWKARDIVRAIGRGFNPEIALKLVSDEYVLEVIDIEDYASSDNSIRRLKGR
CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECHHHCCCCCHHHHHHHH
VIGKEGKSRRYIESLTGANVSVYGNTVAIVGEHEPVQIAKEAVEMLLRGASHAKTYKFLE
EECCCCCCHHHHHHHCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHH
RERQKIKRARFELWKKKSDVDELYEKMNPNYEEIEIEEDEDEIEDEE
HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MVIIMVFGNIGQDKSIEILKIPKDRVGVLIGKKGNVKKTIEKELGVKLEIDADGTVTIYG
CEEEEEECCCCCCCCEEEEECCCHHEEEEEECCCCHHHHHHHHCCEEEEECCCCEEEEEE
TDKQKDPLAVWKARDIVRAIGRGFNPEIALKLVSDEYVLEVIDIEDYASSDNSIRRLKGR
CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECHHHCCCCCHHHHHHHH
VIGKEGKSRRYIESLTGANVSVYGNTVAIVGEHEPVQIAKEAVEMLLRGASHAKTYKFLE
EECCCCCCHHHHHHHCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHH
RERQKIKRARFELWKKKSDVDELYEKMNPNYEEIEIEEDEDEIEDEE
HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087