Definition | Helicobacter pylori 26695, complete genome. |
---|---|
Accession | NC_000915 |
Length | 1,667,867 |
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Identifier: 15645730
GI number: 15645730
Start: 1178384
End: 1181257
Strand: Reverse
Name: Not Available
Synonym: HP1116
Alternate gene names: NA
Gene position: 1181257-1178384 (Counterclockwise)
Preceding gene: 15645731
Following gene: 15645729
Centisome position: 70.82
GC content: 37.51
Gene sequence:
>2874_bases GTGAAGTTACCCAAAGCCTTAAACGAAGCCACCGCAGGAGCGGCCTTAAAATATCACATTAAAAGAGCGCTTGAGAGAAG CCACTCAATAAGCGATTTTAGTAAGAATTTAGAACTAAGCACACAAAAATCCCACTTTAGCAACAACACGCTTAAAATCA TTGAAGAGCTTAACAACGGCGTCAAACAAGCGAGCGAAGAAATCAAAGAAAAAGCGCGCGATTTTTCTAATCAAAAACTC ACTAACGAGCAAATCAAAGATCTATTAAATAACGCAGAAATCCCTACAAGCGGGAGAGACGCTATCACTTTTGGAGTGAA TAACCTAAACCCTGAGATTGTTGAATTCCTGCACAAAAACAACAAGAAAATGATTATAGAAAAAGCCTCTAACAAAGAAT TAGAACTTTTAAAAGACGCTAACTTTAAACACCCTGAAAACATAAGGGCGAGTTTAGATCATGATGCTATCGCTCACATA CTCAAAAGGCATGGCGTTAATTCTGTTAATGTTAGAAATGGTGAGATCCCTATTACGAACGAAGATATTGCTAATTATAG ATATATCGTTAATAACGCTGATGCAATTCTTAGGACTTTAGACAACGAGAATAAAGAACTTATAAGCGCGTTTAAACAAA TCAACGGCTATGCGGTAGTCGTGGAGCAAGCGATCAATAAGAAAAATGAATTAGTTTTGAAAACGATGTATAAGAGTAAA GGAGATTATAAGGATAATAACGCTTATAAGAAGTTTTCAAGCACCCATACACTCAATGCTGATGCAAAGGTGAACCATAG GTTGAGTTCCTATAGCGGTGCTACAGAGAATACTACTCAAAAAGATTTAATAGATCAAGAGAATTTATTAAAAACAAGCG AAAATTTAAACGAAAGCACACCAAAACCTACCAACTTAAGCCCGCTAGAACAAGCCAACGCTGAAAAGTTAGCGAAGTTA GAAAGCGAGAAGCTAGAAAGCGAAAAAGAGTTTTTGAAAGCTAAAGAGCAAGAAGCCACACGCAAAGCCGCATTAAAAAA GAAATTAGAACACGAGCGAGGCAATGCGGGCAACATTGAAAGCCAGACTAAAATAGAAGTAGGAGAGGATATACCCACAC AAACACAAGCGCAATTACCCAAAAGCCGAGTGAGGCTAAACGAACGAGAGATTTACGATCTAGACTATGCGATCGTCAAA GCGAAAGATTTAAAACCAAGCTTTACCACAGGCGGGACGCAAAAGAGAACGGACATGAACGAAGAGCAGATTAAAAGCAT TGCTGAAAATTTTGATCCTAAAAAGATATTTGGTAGCGGAGGGTTTGAAGATTTACCGATCATTCTACATGACGGGCAAG TGATCGCAGGAAACCACAGAATCCAAGGCATGCTAAACTTCACGCCTAAAAGCCGTTTTTCTTACGAGAGAGCGATCAAG GAATACTATCACATAGACTTAAAACCGGACGAGTTGTTAGTGAGAGTGCCACACAAGCGCCTAAACAACACCGAGATCAA CAATTTAGCGGCTTCATCCAATCAAGGACGCTTCAATAGCGAAAGCGATCACGCTATAGCGGTTTTAAGCCACTATGAAG CCAAGTTAAAAGAATTAGACCAAAAATTAGACGCTGATAGCATCTACTCATTAAAAAACATTGTTGCTAAAAATTTGAAT TTTGATAAGGCTACGCATCCTAATGTAACCGATAGTAATTTAGCGTTGCTGATGTTTAACATGCCACGAACCAAAACGCA AGGGATAGAATTACTCAACCGCTGGAAAAAAGAATTTTCCAACGACATTAAAAGCTATGAAAAAGTAAAAAAAATGTTTG TAGATAACGCGGGCAGTTTTCACAATCTCATCCACGATCTGAACTTCCCTAAGGTGAGTTTAAACGCTTATTTAAGCGAT ATTATGGATCGCAGTTTTGCGAATTTAAAGAATTACCAAAGCACGAGCGAGAGCCTGAAAGATTTGAGCGAAAAATTCTA TAAAACGAGTTCGTTAGAGATGTTTGAAAAGAGCGATCAAAGCACGAGCGATATTAGCGAGATTTTAGGAGGAGCGATCG CACGATTTGCACGATTTGATGATCCGAGCAAAGCGTTATTTGAAGCCTTAAGAAGCGATAACATTAAAAAAGGCTTGAAA GATTACAAGATCGCAGATGTTACTAAGGACATGTTTAACGCTGATAGTAAAGAGTTTAAGGACATTGATATTTACGATTT CACGCATTACCTTTTAATGGTAAATAGAGAGCCGAATGAAAATAACCCTATCTTAAAGCGCTTGATAGAAGCCGTGAAAG ACATGCAAAAAGAAAGCGAGAAAGGAATAAAACAAAAACTTGAAACGCCTAGCGAATGGGGACACAATTATAGCGAGTTT AAAGGTGATGGTTTAGGAGCGATTAACAAGTTATTAGAAACTAAAAAAGGTTTTGTAGCGGGAGCGTTTCATAAGGAAGG TTTAGGGGATATTGATTTAGTTTATGGAAACTCTAAATACGGACTAGAACATATATTTAATCGTAGGGAAAGCGATGCGA TAGACAAAGGCATGAGTAAAGAAGAAGCTAAAAAATACGCATTAAAAATAATTAACAATATCCCTAACATAATAAGCAAT GGAAAACTATCAAAAGATAATTTAGGGCGTTTAAGTATTGAGTTTGAAAATCAAAGAGTGGGTTTGAATGATAGTTGGAA AGGTGAGACTTTAAATAATAGGTGGGTTATTACAAGTTATGAAATAGATAAATCAAGGAATGGGCTAATTGAGTCGCCTT TAGCACCAAATTACAAGGGGAAAGATACTAATCCCCTAAACCTTGATAGCCCTAATCCTACCACAAAAAATTAA
Upstream 100 bases:
>100_bases CCAAGGTTTAGCGACCACTCTCAGCGGAGCGTTAAAGTATCAGTGGACTAAATTCACTTTAGGAACGCTATACAGAAACG CGCCCGATCGCATTTTAGGA
Downstream 100 bases:
>100_bases AAAAAGGAATACAATGATCAATTACCCTAATCTACCTAATAGCGCGCTAGAAATCACCGAACAGCCAGAAGTCAAAGAAA TCACTAACGAGCTTTTAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 957; Mature: 957
Protein sequence:
>957_residues MKLPKALNEATAGAALKYHIKRALERSHSISDFSKNLELSTQKSHFSNNTLKIIEELNNGVKQASEEIKEKARDFSNQKL TNEQIKDLLNNAEIPTSGRDAITFGVNNLNPEIVEFLHKNNKKMIIEKASNKELELLKDANFKHPENIRASLDHDAIAHI LKRHGVNSVNVRNGEIPITNEDIANYRYIVNNADAILRTLDNENKELISAFKQINGYAVVVEQAINKKNELVLKTMYKSK GDYKDNNAYKKFSSTHTLNADAKVNHRLSSYSGATENTTQKDLIDQENLLKTSENLNESTPKPTNLSPLEQANAEKLAKL ESEKLESEKEFLKAKEQEATRKAALKKKLEHERGNAGNIESQTKIEVGEDIPTQTQAQLPKSRVRLNEREIYDLDYAIVK AKDLKPSFTTGGTQKRTDMNEEQIKSIAENFDPKKIFGSGGFEDLPIILHDGQVIAGNHRIQGMLNFTPKSRFSYERAIK EYYHIDLKPDELLVRVPHKRLNNTEINNLAASSNQGRFNSESDHAIAVLSHYEAKLKELDQKLDADSIYSLKNIVAKNLN FDKATHPNVTDSNLALLMFNMPRTKTQGIELLNRWKKEFSNDIKSYEKVKKMFVDNAGSFHNLIHDLNFPKVSLNAYLSD IMDRSFANLKNYQSTSESLKDLSEKFYKTSSLEMFEKSDQSTSDISEILGGAIARFARFDDPSKALFEALRSDNIKKGLK DYKIADVTKDMFNADSKEFKDIDIYDFTHYLLMVNREPNENNPILKRLIEAVKDMQKESEKGIKQKLETPSEWGHNYSEF KGDGLGAINKLLETKKGFVAGAFHKEGLGDIDLVYGNSKYGLEHIFNRRESDAIDKGMSKEEAKKYALKIINNIPNIISN GKLSKDNLGRLSIEFENQRVGLNDSWKGETLNNRWVITSYEIDKSRNGLIESPLAPNYKGKDTNPLNLDSPNPTTKN
Sequences:
>Translated_957_residues MKLPKALNEATAGAALKYHIKRALERSHSISDFSKNLELSTQKSHFSNNTLKIIEELNNGVKQASEEIKEKARDFSNQKL TNEQIKDLLNNAEIPTSGRDAITFGVNNLNPEIVEFLHKNNKKMIIEKASNKELELLKDANFKHPENIRASLDHDAIAHI LKRHGVNSVNVRNGEIPITNEDIANYRYIVNNADAILRTLDNENKELISAFKQINGYAVVVEQAINKKNELVLKTMYKSK GDYKDNNAYKKFSSTHTLNADAKVNHRLSSYSGATENTTQKDLIDQENLLKTSENLNESTPKPTNLSPLEQANAEKLAKL ESEKLESEKEFLKAKEQEATRKAALKKKLEHERGNAGNIESQTKIEVGEDIPTQTQAQLPKSRVRLNEREIYDLDYAIVK AKDLKPSFTTGGTQKRTDMNEEQIKSIAENFDPKKIFGSGGFEDLPIILHDGQVIAGNHRIQGMLNFTPKSRFSYERAIK EYYHIDLKPDELLVRVPHKRLNNTEINNLAASSNQGRFNSESDHAIAVLSHYEAKLKELDQKLDADSIYSLKNIVAKNLN FDKATHPNVTDSNLALLMFNMPRTKTQGIELLNRWKKEFSNDIKSYEKVKKMFVDNAGSFHNLIHDLNFPKVSLNAYLSD IMDRSFANLKNYQSTSESLKDLSEKFYKTSSLEMFEKSDQSTSDISEILGGAIARFARFDDPSKALFEALRSDNIKKGLK DYKIADVTKDMFNADSKEFKDIDIYDFTHYLLMVNREPNENNPILKRLIEAVKDMQKESEKGIKQKLETPSEWGHNYSEF KGDGLGAINKLLETKKGFVAGAFHKEGLGDIDLVYGNSKYGLEHIFNRRESDAIDKGMSKEEAKKYALKIINNIPNIISN GKLSKDNLGRLSIEFENQRVGLNDSWKGETLNNRWVITSYEIDKSRNGLIESPLAPNYKGKDTNPLNLDSPNPTTKN >Mature_957_residues MKLPKALNEATAGAALKYHIKRALERSHSISDFSKNLELSTQKSHFSNNTLKIIEELNNGVKQASEEIKEKARDFSNQKL TNEQIKDLLNNAEIPTSGRDAITFGVNNLNPEIVEFLHKNNKKMIIEKASNKELELLKDANFKHPENIRASLDHDAIAHI LKRHGVNSVNVRNGEIPITNEDIANYRYIVNNADAILRTLDNENKELISAFKQINGYAVVVEQAINKKNELVLKTMYKSK GDYKDNNAYKKFSSTHTLNADAKVNHRLSSYSGATENTTQKDLIDQENLLKTSENLNESTPKPTNLSPLEQANAEKLAKL ESEKLESEKEFLKAKEQEATRKAALKKKLEHERGNAGNIESQTKIEVGEDIPTQTQAQLPKSRVRLNEREIYDLDYAIVK AKDLKPSFTTGGTQKRTDMNEEQIKSIAENFDPKKIFGSGGFEDLPIILHDGQVIAGNHRIQGMLNFTPKSRFSYERAIK EYYHIDLKPDELLVRVPHKRLNNTEINNLAASSNQGRFNSESDHAIAVLSHYEAKLKELDQKLDADSIYSLKNIVAKNLN FDKATHPNVTDSNLALLMFNMPRTKTQGIELLNRWKKEFSNDIKSYEKVKKMFVDNAGSFHNLIHDLNFPKVSLNAYLSD IMDRSFANLKNYQSTSESLKDLSEKFYKTSSLEMFEKSDQSTSDISEILGGAIARFARFDDPSKALFEALRSDNIKKGLK DYKIADVTKDMFNADSKEFKDIDIYDFTHYLLMVNREPNENNPILKRLIEAVKDMQKESEKGIKQKLETPSEWGHNYSEF KGDGLGAINKLLETKKGFVAGAFHKEGLGDIDLVYGNSKYGLEHIFNRRESDAIDKGMSKEEAKKYALKIINNIPNIISN GKLSKDNLGRLSIEFENQRVGLNDSWKGETLNNRWVITSYEIDKSRNGLIESPLAPNYKGKDTNPLNLDSPNPTTKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 108560; Mature: 108560
Theoretical pI: Translated: 8.63; Mature: 8.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLPKALNEATAGAALKYHIKRALERSHSISDFSKNLELSTQKSHFSNNTLKIIEELNNG CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHH VKQASEEIKEKARDFSNQKLTNEQIKDLLNNAEIPTSGRDAITFGVNNLNPEIVEFLHKN HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHCC NKKMIIEKASNKELELLKDANFKHPENIRASLDHDAIAHILKRHGVNSVNVRNGEIPITN CCEEEEEECCCCHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCCEEEECCCCCCCCC EDIANYRYIVNNADAILRTLDNENKELISAFKQINGYAVVVEQAINKKNELVLKTMYKSK CCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHCCCEEEEHHHHHCCCHHHHHHHHHHCC GDYKDNNAYKKFSSTHTLNADAKVNHRLSSYSGATENTTQKDLIDQENLLKTSENLNEST CCCCCCCHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHCCCCCC PKPTNLSPLEQANAEKLAKLESEKLESEKEFLKAKEQEATRKAALKKKLEHERGNAGNIE CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC SQTKIEVGEDIPTQTQAQLPKSRVRLNEREIYDLDYAIVKAKDLKPSFTTGGTQKRTDMN CCCEEECCCCCCCCHHHHCCHHHHCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCC EEQIKSIAENFDPKKIFGSGGFEDLPIILHDGQVIAGNHRIQGMLNFTPKSRFSYERAIK HHHHHHHHHCCCCCEEECCCCCCCCCEEEECCEEEECCCEEEEEEECCCCHHHHHHHHHH EYYHIDLKPDELLVRVPHKRLNNTEINNLAASSNQGRFNSESDHAIAVLSHYEAKLKELD HHHCCCCCHHHHEEECCHHHCCCCCHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHH QKLDADSIYSLKNIVAKNLNFDKATHPNVTDSNLALLMFNMPRTKTQGIELLNRWKKEFS HHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH NDIKSYEKVKKMFVDNAGSFHNLIHDLNFPKVSLNAYLSDIMDRSFANLKNYQSTSESLK HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLSEKFYKTSSLEMFEKSDQSTSDISEILGGAIARFARFDDPSKALFEALRSDNIKKGLK HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHH DYKIADVTKDMFNADSKEFKDIDIYDFTHYLLMVNREPNENNPILKRLIEAVKDMQKESE HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH KGIKQKLETPSEWGHNYSEFKGDGLGAINKLLETKKGFVAGAFHKEGLGDIDLVYGNSKY HHHHHHCCCCHHHCCCHHHHCCCCHHHHHHHHHHHCCCEEECHHHCCCCCEEEEECCCCC GLEHIFNRRESDAIDKGMSKEEAKKYALKIINNIPNIISNGKLSKDNLGRLSIEFENQRV CHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCEE GLNDSWKGETLNNRWVITSYEIDKSRNGLIESPLAPNYKGKDTNPLNLDSPNPTTKN CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKLPKALNEATAGAALKYHIKRALERSHSISDFSKNLELSTQKSHFSNNTLKIIEELNNG CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHH VKQASEEIKEKARDFSNQKLTNEQIKDLLNNAEIPTSGRDAITFGVNNLNPEIVEFLHKN HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHCC NKKMIIEKASNKELELLKDANFKHPENIRASLDHDAIAHILKRHGVNSVNVRNGEIPITN CCEEEEEECCCCHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCCEEEECCCCCCCCC EDIANYRYIVNNADAILRTLDNENKELISAFKQINGYAVVVEQAINKKNELVLKTMYKSK CCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHCCCEEEEHHHHHCCCHHHHHHHHHHCC GDYKDNNAYKKFSSTHTLNADAKVNHRLSSYSGATENTTQKDLIDQENLLKTSENLNEST CCCCCCCHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHCCCCCC PKPTNLSPLEQANAEKLAKLESEKLESEKEFLKAKEQEATRKAALKKKLEHERGNAGNIE CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC SQTKIEVGEDIPTQTQAQLPKSRVRLNEREIYDLDYAIVKAKDLKPSFTTGGTQKRTDMN CCCEEECCCCCCCCHHHHCCHHHHCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCC EEQIKSIAENFDPKKIFGSGGFEDLPIILHDGQVIAGNHRIQGMLNFTPKSRFSYERAIK HHHHHHHHHCCCCCEEECCCCCCCCCEEEECCEEEECCCEEEEEEECCCCHHHHHHHHHH EYYHIDLKPDELLVRVPHKRLNNTEINNLAASSNQGRFNSESDHAIAVLSHYEAKLKELD HHHCCCCCHHHHEEECCHHHCCCCCHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHH QKLDADSIYSLKNIVAKNLNFDKATHPNVTDSNLALLMFNMPRTKTQGIELLNRWKKEFS HHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH NDIKSYEKVKKMFVDNAGSFHNLIHDLNFPKVSLNAYLSDIMDRSFANLKNYQSTSESLK HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLSEKFYKTSSLEMFEKSDQSTSDISEILGGAIARFARFDDPSKALFEALRSDNIKKGLK HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHH DYKIADVTKDMFNADSKEFKDIDIYDFTHYLLMVNREPNENNPILKRLIEAVKDMQKESE HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH KGIKQKLETPSEWGHNYSEFKGDGLGAINKLLETKKGFVAGAFHKEGLGDIDLVYGNSKY HHHHHHCCCCHHHCCCHHHHCCCCHHHHHHHHHHHCCCEEECHHHCCCCCEEEEECCCCC GLEHIFNRRESDAIDKGMSKEEAKKYALKIINNIPNIISNGKLSKDNLGRLSIEFENQRV CHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCEE GLNDSWKGETLNNRWVITSYEIDKSRNGLIESPLAPNYKGKDTNPLNLDSPNPTTKN CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA