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The map label for this gene is yomI [H]

Identifier: 15607065

GI number: 15607065

Start: 1488032

End: 1488808

Strand: Direct

Name: yomI [H]

Synonym: aq_2113

Alternate gene names: 15607065

Gene position: 1488032-1488808 (Clockwise)

Preceding gene: 15607064

Following gene: 15607074

Centisome position: 95.92

GC content: 39.9

Gene sequence:

>777_bases
ATGATTATCGTTTTTCTCCTTTTTATTTCTTTAATTTTTGCTTATGAGCCCGGAAGTGTTTACATTTTTAAGTTCCAAGA
GGAAGGAAAGTACAGGGTAATTTTAAAGTCTAACCAAGAAGTTTACTCCTTTGACTGCACAGGGAAAATTTGTCTTTGGG
GAGTGCCTCTGAGTCTAAACGGGAAAAATGCACTCCTTGAGGTAAAGAGAGGAAGTAAAATAATCTTTAAAAAGCGGATA
AAAATTTCAAGAAAAAGGTTCAAGGTTTACACATTAAGAATAAGAAAAAGGAAGCTTACACCTAAATTAATACGAAGAAT
TAAAAAGGAAAGAGAAAAGATTTTAAAGGTTCTGAAAACTCCCACTATTCCGGGAATTTCCCGTCTTGAGCTTTCAAAAC
CTTTAAATAAACTCGTGGTTACTTCTGAATTCGGAGAGATTCGTTTAATAAACGGTAAAAGGAAGAGCGTTCACAGGGGT
GTAGACTTCAGGGCAAAGGAGGGAGAACTCGTTTACGCAATCATGCCCGGGAAGGTAAGACTCACCGGAAACTTCTTCTT
TACAGGCAATACGGTTATAGTAGAACACGGGCAGGGACTTTATTCCCTTTACGCTCATCTCTCGGAAATTTTAGTAAAGG
AAGGACAGTTGGTAAAAGCGGGAGAGTTGATAGGAAGGGCAGGCTCTACGGGGCGTTCAACGGGTCCGCACCTGCACCTA
GGTCTTTACCTCAACGGTATTCCCTTTAATCCTCTCAGTCTTTTAAGGCTTCGGTAA

Upstream 100 bases:

>100_bases
ATAAACTCCTTTACAAGACGGGAACCTCAGTTCAGGAAGTATTCGTGGTTTGCAAAGACTACGAGGAGTTTGAGAAAAAG
TTTAAAGAAGTTTTCGGAAA

Downstream 100 bases:

>100_bases
TCCTTTCCGGTTTGAATATACCTTTTTCTGTAATAATTCCCGTTATTAACTCCGCAGGTGTTATGTCAAAGGCAAGGTGC
AAAGCGTCTGACTCCTTGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MIIVFLLFISLIFAYEPGSVYIFKFQEEGKYRVILKSNQEVYSFDCTGKICLWGVPLSLNGKNALLEVKRGSKIIFKKRI
KISRKRFKVYTLRIRKRKLTPKLIRRIKKEREKILKVLKTPTIPGISRLELSKPLNKLVVTSEFGEIRLINGKRKSVHRG
VDFRAKEGELVYAIMPGKVRLTGNFFFTGNTVIVEHGQGLYSLYAHLSEILVKEGQLVKAGELIGRAGSTGRSTGPHLHL
GLYLNGIPFNPLSLLRLR

Sequences:

>Translated_258_residues
MIIVFLLFISLIFAYEPGSVYIFKFQEEGKYRVILKSNQEVYSFDCTGKICLWGVPLSLNGKNALLEVKRGSKIIFKKRI
KISRKRFKVYTLRIRKRKLTPKLIRRIKKEREKILKVLKTPTIPGISRLELSKPLNKLVVTSEFGEIRLINGKRKSVHRG
VDFRAKEGELVYAIMPGKVRLTGNFFFTGNTVIVEHGQGLYSLYAHLSEILVKEGQLVKAGELIGRAGSTGRSTGPHLHL
GLYLNGIPFNPLSLLRLR
>Mature_258_residues
MIIVFLLFISLIFAYEPGSVYIFKFQEEGKYRVILKSNQEVYSFDCTGKICLWGVPLSLNGKNALLEVKRGSKIIFKKRI
KISRKRFKVYTLRIRKRKLTPKLIRRIKKEREKILKVLKTPTIPGISRLELSKPLNKLVVTSEFGEIRLINGKRKSVHRG
VDFRAKEGELVYAIMPGKVRLTGNFFFTGNTVIVEHGQGLYSLYAHLSEILVKEGQLVKAGELIGRAGSTGRSTGPHLHL
GLYLNGIPFNPLSLLRLR

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=100, Percent_Identity=43, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789099, Length=108, Percent_Identity=36.1111111111111, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 29397; Mature: 29397

Theoretical pI: Translated: 11.12; Mature: 11.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIVFLLFISLIFAYEPGSVYIFKFQEEGKYRVILKSNQEVYSFDCTGKICLWGVPLSLN
CEEHHHHHHHHHHEECCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEEEEC
GKNALLEVKRGSKIIFKKRIKISRKRFKVYTLRIRKRKLTPKLIRRIKKEREKILKVLKT
CCCEEEEEECCCEEEEEHHHHHHHEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
PTIPGISRLELSKPLNKLVVTSEFGEIRLINGKRKSVHRGVDFRAKEGELVYAIMPGKVR
CCCCCCCHHHHHCCHHHEEEEECCCCEEEECCCCHHHHCCCCCEECCCCEEEEEECCEEE
LTGNFFFTGNTVIVEHGQGLYSLYAHLSEILVKEGQLVKAGELIGRAGSTGRSTGPHLHL
EEEEEEEECCEEEEECCCCHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCCCCEEEE
GLYLNGIPFNPLSLLRLR
EEEEECCCCCCHHEEEEC
>Mature Secondary Structure
MIIVFLLFISLIFAYEPGSVYIFKFQEEGKYRVILKSNQEVYSFDCTGKICLWGVPLSLN
CEEHHHHHHHHHHEECCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEEEEC
GKNALLEVKRGSKIIFKKRIKISRKRFKVYTLRIRKRKLTPKLIRRIKKEREKILKVLKT
CCCEEEEEECCCEEEEEHHHHHHHEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
PTIPGISRLELSKPLNKLVVTSEFGEIRLINGKRKSVHRGVDFRAKEGELVYAIMPGKVR
CCCCCCCHHHHHCCHHHEEEEECCCCEEEECCCCHHHHCCCCCEECCCCEEEEEECCEEE
LTGNFFFTGNTVIVEHGQGLYSLYAHLSEILVKEGQLVKAGELIGRAGSTGRSTGPHLHL
EEEEEEEECCEEEEECCCCHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCCCCEEEE
GLYLNGIPFNPLSLLRLR
EEEEECCCCCCHHEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]