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The map label for this gene is ygcF [C]

Identifier: 15602049

GI number: 15602049

Start: 207357

End: 207986

Strand: Reverse

Name: ygcF [C]

Synonym: PM0184

Alternate gene names: 15602049

Gene position: 207986-207357 (Counterclockwise)

Preceding gene: 15602050

Following gene: 15602048

Centisome position: 9.21

GC content: 37.94

Gene sequence:

>630_bases
GTGCAAATTCAAGAAATTTTCGAGCCTAAATATGCTATTGTGGAGATCTTTGAAAGCTTACAAGGGGAAGGCTTTAATAC
AGGGATGCCAAGCATTTTTGTGCGTTTTGGTAAATGTAATTTAGCCTGTCCTTGGTGCGATACGCCTTACAATCAATATA
CGACTTGGACACTCAGCAAAATTGTACAAAAAGTGCGGTCGTTTTCAGCAAAAAATATTATTATCACTGGCGGTGAACCT
ACTATCGTGCCCAAAATTGGCGTATTACTTGATGCGCTAAAAGCCGAAGGCTACTTTTTAGCAATCGAAACCAATGGGTT
AAAAAGTATTCCAAACCAAATTGATTACATTGCTACCAGTCCAAAACGTTTGTATCAACATAAATATCAACAGAAATGTA
TTCCTTTTGCCCATGAAGTACGCATTGTGGCAGATGAAAATGTCATCGCATTTTGTGAGCAAATTGAACAACAGATCCGA
GCAGATCATTATTACCTCTCACCTTGTGAAGTAAATGGTGAAATGAATTTGCTTGAAACAATCACACAAATAGGGCGCTT
AAATCAGCGTGTTAACAAGCCTAAATGGCAGCTTAGCATTCAAACCCATAAACTCATTGGGATTGAATAA

Upstream 100 bases:

>100_bases
TTATGTTTAATTGTTTGAAATATGAGGCACATTTACCGGTATCGGCGATCCGCTTATGGGAAACCCCCACTTCATTTTGT
GAATATAAGGAATAAGTGCG

Downstream 100 bases:

>100_bases
TTGTCAATTTATTTACTTTATTTGCATTTACCTCTTTTTAGTAGTTGACCATTATATAATAAAGTATATAATGAGCTTGT
TTTTAATTTGAAGTAGTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MQIQEIFEPKYAIVEIFESLQGEGFNTGMPSIFVRFGKCNLACPWCDTPYNQYTTWTLSKIVQKVRSFSAKNIIITGGEP
TIVPKIGVLLDALKAEGYFLAIETNGLKSIPNQIDYIATSPKRLYQHKYQQKCIPFAHEVRIVADENVIAFCEQIEQQIR
ADHYYLSPCEVNGEMNLLETITQIGRLNQRVNKPKWQLSIQTHKLIGIE

Sequences:

>Translated_209_residues
MQIQEIFEPKYAIVEIFESLQGEGFNTGMPSIFVRFGKCNLACPWCDTPYNQYTTWTLSKIVQKVRSFSAKNIIITGGEP
TIVPKIGVLLDALKAEGYFLAIETNGLKSIPNQIDYIATSPKRLYQHKYQQKCIPFAHEVRIVADENVIAFCEQIEQQIR
ADHYYLSPCEVNGEMNLLETITQIGRLNQRVNKPKWQLSIQTHKLIGIE
>Mature_209_residues
MQIQEIFEPKYAIVEIFESLQGEGFNTGMPSIFVRFGKCNLACPWCDTPYNQYTTWTLSKIVQKVRSFSAKNIIITGGEP
TIVPKIGVLLDALKAEGYFLAIETNGLKSIPNQIDYIATSPKRLYQHKYQQKCIPFAHEVRIVADENVIAFCEQIEQQIR
ADHYYLSPCEVNGEMNLLETITQIGRLNQRVNKPKWQLSIQTHKLIGIE

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=240, Percent_Identity=28.3333333333333, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23914; Mature: 23914

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIQEIFEPKYAIVEIFESLQGEGFNTGMPSIFVRFGKCNLACPWCDTPYNQYTTWTLSK
CCCHHHHCCHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCEECCCCCCCCCCCHHHHHHH
IVQKVRSFSAKNIIITGGEPTIVPKIGVLLDALKAEGYFLAIETNGLKSIPNQIDYIATS
HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHCCCHHHHHCCC
PKRLYQHKYQQKCIPFAHEVRIVADENVIAFCEQIEQQIRADHYYLSPCEVNGEMNLLET
HHHHHHHHHHHHCCCCHHEEEEEECCCHHHHHHHHHHHHHCCCEEECCEEECCCHHHHHH
ITQIGRLNQRVNKPKWQLSIQTHKLIGIE
HHHHHHHHHHCCCCEEEEEEEEEEEEECC
>Mature Secondary Structure
MQIQEIFEPKYAIVEIFESLQGEGFNTGMPSIFVRFGKCNLACPWCDTPYNQYTTWTLSK
CCCHHHHCCHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCEECCCCCCCCCCCHHHHHHH
IVQKVRSFSAKNIIITGGEPTIVPKIGVLLDALKAEGYFLAIETNGLKSIPNQIDYIATS
HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHCCCHHHHHCCC
PKRLYQHKYQQKCIPFAHEVRIVADENVIAFCEQIEQQIRADHYYLSPCEVNGEMNLLET
HHHHHHHHHHHHCCCCHHEEEEEECCCHHHHHHHHHHHHHCCCEEECCEEECCCHHHHHH
ITQIGRLNQRVNKPKWQLSIQTHKLIGIE
HHHHHHHHHHCCCCEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]