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The map label for this gene is yggS [C]

Identifier: 15601977

GI number: 15601977

Start: 136386

End: 137087

Strand: Reverse

Name: yggS [C]

Synonym: PM0112

Alternate gene names: 15601977

Gene position: 137087-136386 (Counterclockwise)

Preceding gene: 15601984

Following gene: 15601976

Centisome position: 6.07

GC content: 43.3

Gene sequence:

>702_bases
ATGACAATCGAACAAAATTTAGCACAAATTCAACAAAATATTCAGCACGCGGTCCAACAAGCCAAGCGCCCAGAAAGTGC
GGTCAAATTACTCGCTGTTTCAAAAACCAAACCCGTTGAAGATATCTATCAAGCCTATCAAGCTGGACAAACCGCGTTTG
GCGAAAACTATGTACAAGAAGGCGTGGAAAAAATTCAGTATTTTGCCCAAAAAAATATCCCTCTTGAATGGCATTTCATC
GGTCCGCTTCAATCAAATAAAACCAAACTCGTGGCAGAACATTTTGACTGGATGCAAACGCTCGACCGCAAAAAAATCGC
CGACCGTCTTAACGAGCAACGCCCACATTATAAAAAACCACTGAATGTATTAATCCAAATTAACATCAGCGATGAAGACA
GCAAATCTGGCATTCAACCCAACGAAATGCTTGATCTAGCAAAACAGATCCAAAACCTACCGCACTTATGCCTCCGCGGC
TTAATGGCTATCCCCGCCCCCACCGACGATCTTGCCACACAAGAACAAGCATTCACCCAAATGCACAGCTTATTTGAACA
ACTCAAACAAGCCTTACCCGATGCACAAATTGATACGCTTTCAATGGGGATGACTGATGATATGGCGAGCGCCATTCAAT
GTGGTTCAACAATGGTAAGAATTGGGACAGCGATTTTTGGGGCGAGGGATTATTCGAAATAA

Upstream 100 bases:

>100_bases
AATGGGATAAATTTTTAAAAAGCACTAACATCTTGTAATATATCGCCACAAAATTTTATTTTTGCCTCAATTTTCCCTAT
TAAGATGCAGGATGCGCCCG

Downstream 100 bases:

>100_bases
AGAGCAAATCTTATTCATAAAAGGTATGTAAAAATGAACGCAGAATTAAAACAAGATCTCACGGAATTTTTACGCCTATC
ATTAGTCGATGATGAATTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MTIEQNLAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQEGVEKIQYFAQKNIPLEWHFI
GPLQSNKTKLVAEHFDWMQTLDRKKIADRLNEQRPHYKKPLNVLIQINISDEDSKSGIQPNEMLDLAKQIQNLPHLCLRG
LMAIPAPTDDLATQEQAFTQMHSLFEQLKQALPDAQIDTLSMGMTDDMASAIQCGSTMVRIGTAIFGARDYSK

Sequences:

>Translated_233_residues
MTIEQNLAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQEGVEKIQYFAQKNIPLEWHFI
GPLQSNKTKLVAEHFDWMQTLDRKKIADRLNEQRPHYKKPLNVLIQINISDEDSKSGIQPNEMLDLAKQIQNLPHLCLRG
LMAIPAPTDDLATQEQAFTQMHSLFEQLKQALPDAQIDTLSMGMTDDMASAIQCGSTMVRIGTAIFGARDYSK
>Mature_232_residues
TIEQNLAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQEGVEKIQYFAQKNIPLEWHFIG
PLQSNKTKLVAEHFDWMQTLDRKKIADRLNEQRPHYKKPLNVLIQINISDEDSKSGIQPNEMLDLAKQIQNLPHLCLRGL
MAIPAPTDDLATQEQAFTQMHSLFEQLKQALPDAQIDTLSMGMTDDMASAIQCGSTMVRIGTAIFGARDYSK

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family

Homologues:

Organism=Homo sapiens, GI6005842, Length=239, Percent_Identity=41.0041841004184, Blast_Score=144, Evalue=4e-35,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=60.3448275862069, Blast_Score=274, Evalue=3e-75,
Organism=Caenorhabditis elegans, GI17533025, Length=243, Percent_Identity=34.9794238683128, Blast_Score=124, Evalue=4e-29,
Organism=Saccharomyces cerevisiae, GI6319435, Length=216, Percent_Identity=37.5, Blast_Score=114, Evalue=9e-27,
Organism=Drosophila melanogaster, GI45550861, Length=223, Percent_Identity=41.7040358744395, Blast_Score=144, Evalue=5e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y112_PASMU (Q9CPD5)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_245049.1
- ProteinModelPortal:   Q9CPD5
- SMR:   Q9CPD5
- GeneID:   1243459
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM0112
- NMPDR:   fig|272843.1.peg.112
- HOGENOM:   HBG289671
- OMA:   VCIEVNI
- ProtClustDB:   CLSK869970
- BioCyc:   PMUL272843:PM0112-MONOMER
- InterPro:   IPR001608
- InterPro:   IPR011078
- PANTHER:   PTHR10146
- PIRSF:   PIRSF004848
- TIGRFAMs:   TIGR00044

Pfam domain/function: PF01168 Ala_racemase_N

EC number: NA

Molecular weight: Translated: 26323; Mature: 26192

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIEQNLAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQE
CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHH
GVEKIQYFAQKNIPLEWHFIGPLQSNKTKLVAEHFDWMQTLDRKKIADRLNEQRPHYKKP
HHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LNVLIQINISDEDSKSGIQPNEMLDLAKQIQNLPHLCLRGLMAIPAPTDDLATQEQAFTQ
CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHH
MHSLFEQLKQALPDAQIDTLSMGMTDDMASAIQCGSTMVRIGTAIFGARDYSK
HHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TIEQNLAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQE
CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHH
GVEKIQYFAQKNIPLEWHFIGPLQSNKTKLVAEHFDWMQTLDRKKIADRLNEQRPHYKKP
HHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LNVLIQINISDEDSKSGIQPNEMLDLAKQIQNLPHLCLRGLMAIPAPTDDLATQEQAFTQ
CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHH
MHSLFEQLKQALPDAQIDTLSMGMTDDMASAIQCGSTMVRIGTAIFGARDYSK
HHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100