Click here to switch to the map view.

The map label for this gene is ycfF [C]

Identifier: 15601938

GI number: 15601938

Start: 98748

End: 99098

Strand: Reverse

Name: ycfF [C]

Synonym: PM0073

Alternate gene names: 15601938

Gene position: 99098-98748 (Counterclockwise)

Preceding gene: 15601943

Following gene: 15601937

Centisome position: 4.39

GC content: 41.6

Gene sequence:

>351_bases
ATGGCTGAAGAAACGATTTTCAGTAAAATCATTCGTCAAGAAATTCCAGCGAATATTGTTTATCAAGATGAATTGGTCAC
GGCCTTTCGTGATATTTCACCACAAGCAAAAACTCACATTCTGATTATTCCAAACAAGCTCATTCCTACGGTTAACGACG
TTACCGCGCAAGATGAAATCAGTTTAGGTCGCCTTTTTACTGTGGCGGCGAAGCTTGCCAAAGACGAAGGCATAGCAGAA
GACGGCTACCGCTTAATTGTGAACTGTAATAAACATGGTGGACAAGAAGTCTTTCATTTGCATATGCACCTCGTGGGTGG
TGAACCACTTGGTAGAATGTTGGCAAAATAA

Upstream 100 bases:

>100_bases
AGCAAAAAGCTACACTCTAGTGTCCTGAAAAAATTGCCATTTTAGCCATTTTCTGTTAAAACGTGCGTAGATTTTCACAT
AATGAAAAAGGATAAGTAAC

Downstream 100 bases:

>100_bases
TGAAAAAACTGACCGCTCTTTTCATCTCAAGCTATCTGCTTGCGGGTTGTGGTTCTCACCAACCCGTGAATCTGCTACAT
ACACATCAGCCTATCTTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MAEETIFSKIIRQEIPANIVYQDELVTAFRDISPQAKTHILIIPNKLIPTVNDVTAQDEISLGRLFTVAAKLAKDEGIAE
DGYRLIVNCNKHGGQEVFHLHMHLVGGEPLGRMLAK

Sequences:

>Translated_116_residues
MAEETIFSKIIRQEIPANIVYQDELVTAFRDISPQAKTHILIIPNKLIPTVNDVTAQDEISLGRLFTVAAKLAKDEGIAE
DGYRLIVNCNKHGGQEVFHLHMHLVGGEPLGRMLAK
>Mature_115_residues
AEETIFSKIIRQEIPANIVYQDELVTAFRDISPQAKTHILIIPNKLIPTVNDVTAQDEISLGRLFTVAAKLAKDEGIAED
GYRLIVNCNKHGGQEVFHLHMHLVGGEPLGRMLAK

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI14211923, Length=109, Percent_Identity=46.7889908256881, Blast_Score=110, Evalue=2e-25,
Organism=Homo sapiens, GI4885413, Length=107, Percent_Identity=48.5981308411215, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787346, Length=115, Percent_Identity=79.1304347826087, Blast_Score=172, Evalue=4e-45,
Organism=Caenorhabditis elegans, GI17506713, Length=109, Percent_Identity=46.7889908256881, Blast_Score=110, Evalue=2e-25,
Organism=Drosophila melanogaster, GI28574010, Length=109, Percent_Identity=45.8715596330275, Blast_Score=108, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24581222, Length=109, Percent_Identity=45.8715596330275, Blast_Score=108, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 12887; Mature: 12756

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEETIFSKIIRQEIPANIVYQDELVTAFRDISPQAKTHILIIPNKLIPTVNDVTAQDEI
CCHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCH
SLGRLFTVAAKLAKDEGIAEDGYRLIVNCNKHGGQEVFHLHMHLVGGEPLGRMLAK
HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCHHHHHCC
>Mature Secondary Structure 
AEETIFSKIIRQEIPANIVYQDELVTAFRDISPQAKTHILIIPNKLIPTVNDVTAQDEI
CHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCH
SLGRLFTVAAKLAKDEGIAEDGYRLIVNCNKHGGQEVFHLHMHLVGGEPLGRMLAK
HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]