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The map label for this gene is rbfA [H]

Identifier: 15595147

GI number: 15595147

Start: 847105

End: 847488

Strand: Direct

Name: rbfA [H]

Synonym: BB0802

Alternate gene names: 15595147

Gene position: 847105-847488 (Clockwise)

Preceding gene: 15595146

Following gene: 15595148

Centisome position: 93.01

GC content: 26.82

Gene sequence:

>384_bases
TTGTTTTATTTATATGTGTTTATGTATAAGAATATTAAAAAGTTTAAACTTGAAAGTTTTATTGCTCAAGAAATCGGCAA
TTTAATAGTAAGTGGGGGGATTAAAGATCCCAGAATTCATTCATTTTTAACCGTGGTTAAAGTAGAATTTTCAAAAGATT
TAATAAATGCTAAAGTGTTTATGGGCTCTATTAAGGAAGGTGCTTCTTTGGACAATGCAGTTAAAGCTTTAAATAATGCT
AAGGGATTTATTCAAAGTCAAATTATTAAGCGAATTAAAGTTAGAAGCACTCCCAAATTATTATTTGTTAAGGATGATTC
TCTTTCCAAATCATTTTATGTTAATAAGTTAATTGAAGGATTAAATACTACAAGAGAGAATTAA

Upstream 100 bases:

>100_bases
AGTGTGGTATTATGATTGATAATTATGCTAATATTAAAGAAGGAGATATAATTGAAGCATTTGAGGTAAAAAAGGTTAAA
AAATCTTTTAAAACTTAGTA

Downstream 100 bases:

>100_bases
ATTTGGAAAATGGATTCCTTTTAATTAATAAAGAACAAGGTAAAACTTCTTTTGAAACTCTTTTCCCTATAAAAAAATAT
TTTAATACAAATCGTGTTGG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MFYLYVFMYKNIKKFKLESFIAQEIGNLIVSGGIKDPRIHSFLTVVKVEFSKDLINAKVFMGSIKEGASLDNAVKALNNA
KGFIQSQIIKRIKVRSTPKLLFVKDDSLSKSFYVNKLIEGLNTTREN

Sequences:

>Translated_127_residues
MFYLYVFMYKNIKKFKLESFIAQEIGNLIVSGGIKDPRIHSFLTVVKVEFSKDLINAKVFMGSIKEGASLDNAVKALNNA
KGFIQSQIIKRIKVRSTPKLLFVKDDSLSKSFYVNKLIEGLNTTREN
>Mature_127_residues
MFYLYVFMYKNIKKFKLESFIAQEIGNLIVSGGIKDPRIHSFLTVVKVEFSKDLINAKVFMGSIKEGASLDNAVKALNNA
KGFIQSQIIKRIKVRSTPKLLFVKDDSLSKSFYVNKLIEGLNTTREN

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=117, Percent_Identity=35.8974358974359, Blast_Score=64, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 14441; Mature: 14441

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYLYVFMYKNIKKFKLESFIAQEIGNLIVSGGIKDPRIHSFLTVVKVEFSKDLINAKVF
CEEEEEEEHHCHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MGSIKEGASLDNAVKALNNAKGFIQSQIIKRIKVRSTPKLLFVKDDSLSKSFYVNKLIEG
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH
LNTTREN
HHCCCCC
>Mature Secondary Structure
MFYLYVFMYKNIKKFKLESFIAQEIGNLIVSGGIKDPRIHSFLTVVKVEFSKDLINAKVF
CEEEEEEEHHCHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MGSIKEGASLDNAVKALNNAKGFIQSQIIKRIKVRSTPKLLFVKDDSLSKSFYVNKLIEG
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH
LNTTREN
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA