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The map label for this gene is rimM

Identifier: 15595042

GI number: 15595042

Start: 737212

End: 737712

Strand: Direct

Name: rimM

Synonym: BB0697

Alternate gene names: 15595042

Gene position: 737212-737712 (Clockwise)

Preceding gene: 15595041

Following gene: 15595043

Centisome position: 80.95

GC content: 28.74

Gene sequence:

>501_bases
ATGTTTATTAAAGGCGTTATATTATCGTCTTATGGAGTTAATGGGTATGCTAGGGTTAAAAGCATATCCAATAATTTTTG
TGATTTTATTAATCTAAAAAACAATAAAGTTCTTTTAAAAAAAAGCAATAGTTCCAGTGTTGAAGTTAAAGTTGTAGATG
TTAATATAAAGGGTAATTCCTTATTTTTGAAGTTTGAAGAGATTGATACTCCAGAGGCAGTTAGGCCGCTGATTGGTTTT
GAATTGTGGGTTGATGATTCGCTTGCATCGAGTTTAAAAGAAGGCGAATATTATTTAGGAAAGCTTATTGGCTATGCCAT
TGTTAATAATAATAAAAAACTAGGAGAAGTTGTAGCTTTCTTTGAATATTTAAATAGTGTATTTCTTGAGGTCAGAGTGG
GTATTAAATTTTTCTTTATTCCCTTTTTAAGTATATATATTGGAGATATAAATACTCAAGAAAAAACAATTGAGCTTAAG
GTTCTAGATCTTTTAAAATGA

Upstream 100 bases:

>100_bases
CGGAAGACGGGGTCGTATTGCGCGGGCTATTAGAACTTTGCTTGGAGCTTGTGCTGCCAAAACCAATAGGCGAGTGCAAT
TGGAAATTTTAGATTAATCT

Downstream 100 bases:

>100_bases
AATTTACGGTTTTATCCCTTTTTCCAGCAATAATTAAGCCATTTTTTGAAAATTCAATAATGAAAAAAGCTATTAATAAG
GGAATAGTAAGTTTTGAGCT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MFIKGVILSSYGVNGYARVKSISNNFCDFINLKNNKVLLKKSNSSSVEVKVVDVNIKGNSLFLKFEEIDTPEAVRPLIGF
ELWVDDSLASSLKEGEYYLGKLIGYAIVNNNKKLGEVVAFFEYLNSVFLEVRVGIKFFFIPFLSIYIGDINTQEKTIELK
VLDLLK

Sequences:

>Translated_166_residues
MFIKGVILSSYGVNGYARVKSISNNFCDFINLKNNKVLLKKSNSSSVEVKVVDVNIKGNSLFLKFEEIDTPEAVRPLIGF
ELWVDDSLASSLKEGEYYLGKLIGYAIVNNNKKLGEVVAFFEYLNSVFLEVRVGIKFFFIPFLSIYIGDINTQEKTIELK
VLDLLK
>Mature_166_residues
MFIKGVILSSYGVNGYARVKSISNNFCDFINLKNNKVLLKKSNSSSVEVKVVDVNIKGNSLFLKFEEIDTPEAVRPLIGF
ELWVDDSLASSLKEGEYYLGKLIGYAIVNNNKKLGEVVAFFEYLNSVFLEVRVGIKFFFIPFLSIYIGDINTQEKTIELK
VLDLLK

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_BORBU (O51640)

Other databases:

- EMBL:   AE000783
- PIR:   H70186
- RefSeq:   NP_212831.1
- ProteinModelPortal:   O51640
- EnsemblBacteria:   EBBORT00000009082
- GeneID:   1195550
- GenomeReviews:   AE000783_GR
- KEGG:   bbu:BB0697
- NMPDR:   fig|224326.1.peg.1081
- TIGR:   BB_0697
- GeneTree:   EBGT00050000007183
- HOGENOM:   HBG354483
- OMA:   IGFELWV
- ProtClustDB:   PRK14594
- BioCyc:   BBUR224326:BB_0697-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18764; Mature: 18764

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIKGVILSSYGVNGYARVKSISNNFCDFINLKNNKVLLKKSNSSSVEVKVVDVNIKGNS
CEEEEEEEECCCCCCEEEEEHHCCCCEEEEEECCCEEEEEECCCCEEEEEEEEEEECCCE
LFLKFEEIDTPEAVRPLIGFELWVDDSLASSLKEGEYYLGKLIGYAIVNNNKKLGEVVAF
EEEEEECCCCCHHHHHHHCEEEEECHHHHHHHHCCHHHHHHHHEEEEECCCCHHHHHHHH
FEYLNSVFLEVRVGIKFFFIPFLSIYIGDINTQEKTIELKVLDLLK
HHHHHHHHHHHHHCHHHHHHHHHHHEECCCCCCCEEEEEEEEECCC
>Mature Secondary Structure
MFIKGVILSSYGVNGYARVKSISNNFCDFINLKNNKVLLKKSNSSSVEVKVVDVNIKGNS
CEEEEEEEECCCCCCEEEEEHHCCCCEEEEEECCCEEEEEECCCCEEEEEEEEEEECCCE
LFLKFEEIDTPEAVRPLIGFELWVDDSLASSLKEGEYYLGKLIGYAIVNNNKKLGEVVAF
EEEEEECCCCCHHHHHHHCEEEEECHHHHHHHHCCHHHHHHHHEEEEECCCCHHHHHHHH
FEYLNSVFLEVRVGIKFFFIPFLSIYIGDINTQEKTIELKVLDLLK
HHHHHHHHHHHHHCHHHHHHHHHHHEECCCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9403685