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The map label for this gene is xylR [H]

Identifier: 15595038

GI number: 15595038

Start: 734081

End: 735289

Strand: Direct

Name: xylR [H]

Synonym: BB0693

Alternate gene names: 15595038

Gene position: 734081-735289 (Clockwise)

Preceding gene: 15595037

Following gene: 15595039

Centisome position: 80.6

GC content: 29.03

Gene sequence:

>1209_bases
ATGCAGGGTGAAAATATGGTTTCAATTAGAGGCGGAAATAGAAGAAAAATTCTTCTTAGTTTGAAAAATATGCAATATTC
AAGAACAGACCTGGCTCGTAAGTTAAGCTTGACAAATGCTGCAGTTACTATTTTGACTAATCAAATGATAAAAGAAAATC
TTTTGATTGAAGTTGGCTCTAGGGTGTCTGATGTTAAAAAACATGGACGAAAAGAAATACTTCTCGATATTAATAAAGAT
TATGCGTATTCAATGGGAGTTATTATTTCTAGCAATTATTTTCAAATAGGTATTGCCAATCTTAAATGCGAGGTTTTAAT
AAGCGAGACTCATTCTTTTGAGCCCCCAGTTAGCGCTTATGATATTTTAGAAAAAATAAAAGATCATATGATAGAAATTA
TTTGGAAACATAATTTCTCAAGAGATAAGTTTATTGGCTTAGGCTTTAGTATTACAGGGTTAATAAAGGATAAAGAATTG
GGCATTGTTAATGATAGCTATGGATCGTGGATTGAAAAAGATGTTCCTGTTAAGAGAATACTTGAGGAATACTTTTCACT
AACAGTTTATCTTGAAAGTTATGTTAAAAATTTATCTCTTGCTGAATTTATGGGTAAAAATATAGATAATATTATGTTTT
TTGACTACACAGATACTGCTGAACTTTCGATTTGGTCAGGCGGCAATGTTTACCCTGGTTTTAATAATAAATCAGGTATG
GTTAGTCACATGATAATTGATTATGAGGGAGAAAAAAATTGTCCAACTTGTGGTAATAAGGGTTGTGTCAATATGCTAAT
ATCTAATTTTGCTTTGCAGAGATTGATTTCCAAAGAATTTATGAATGGTGAGATTCCTGAGCTTTATGAAAAGTATGAGG
GCAGATTGAAAAAGGTTACAATATATGACATTTTTTCTCTTTATGAAAAATATGATTTTATAAATAAAATTATGCAAGAT
ACTGTTAAATATTTGGCAATAATTATTATTAATATTCAAAGAATGCTTGATTTTAATTATTTAGTACTCTATGGTCAAAG
TTTTAAATTAAAAGCTTTTTTTGATTTGTTAAAAGAAGAGATTAAAAAGCTCAATAAAGAGAATATAGTATTAAAGCTTA
GTTCATTAGATACTGAAGTTTCTGTTGTTGGGCCCGCTTCCAGTGTTATTTTTAATAAATTTTATTTGACTGGAGGAGAT
ATTGATTAA

Upstream 100 bases:

>100_bases
GGCATGTTTGTCTTTTAAGAATAGATAAAATATTGTATTGGTTTTTTTGATATGATATTTTATAATATTTTTTTTATTTT
AAAAATAAAGGAGGTGTATT

Downstream 100 bases:

>100_bases
TATTGCCTTTTTTTGTATCTTATATTTGACAAGATTATTTTTGAGAATAAGGGTTGTTTTTAATGCTTGAAAGTTTGGGG
TCAAATTTTAGAAATTTTAT

Product: xylose operon regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MQGENMVSIRGGNRRKILLSLKNMQYSRTDLARKLSLTNAAVTILTNQMIKENLLIEVGSRVSDVKKHGRKEILLDINKD
YAYSMGVIISSNYFQIGIANLKCEVLISETHSFEPPVSAYDILEKIKDHMIEIIWKHNFSRDKFIGLGFSITGLIKDKEL
GIVNDSYGSWIEKDVPVKRILEEYFSLTVYLESYVKNLSLAEFMGKNIDNIMFFDYTDTAELSIWSGGNVYPGFNNKSGM
VSHMIIDYEGEKNCPTCGNKGCVNMLISNFALQRLISKEFMNGEIPELYEKYEGRLKKVTIYDIFSLYEKYDFINKIMQD
TVKYLAIIIINIQRMLDFNYLVLYGQSFKLKAFFDLLKEEIKKLNKENIVLKLSSLDTEVSVVGPASSVIFNKFYLTGGD
ID

Sequences:

>Translated_402_residues
MQGENMVSIRGGNRRKILLSLKNMQYSRTDLARKLSLTNAAVTILTNQMIKENLLIEVGSRVSDVKKHGRKEILLDINKD
YAYSMGVIISSNYFQIGIANLKCEVLISETHSFEPPVSAYDILEKIKDHMIEIIWKHNFSRDKFIGLGFSITGLIKDKEL
GIVNDSYGSWIEKDVPVKRILEEYFSLTVYLESYVKNLSLAEFMGKNIDNIMFFDYTDTAELSIWSGGNVYPGFNNKSGM
VSHMIIDYEGEKNCPTCGNKGCVNMLISNFALQRLISKEFMNGEIPELYEKYEGRLKKVTIYDIFSLYEKYDFINKIMQD
TVKYLAIIIINIQRMLDFNYLVLYGQSFKLKAFFDLLKEEIKKLNKENIVLKLSSLDTEVSVVGPASSVIFNKFYLTGGD
ID
>Mature_402_residues
MQGENMVSIRGGNRRKILLSLKNMQYSRTDLARKLSLTNAAVTILTNQMIKENLLIEVGSRVSDVKKHGRKEILLDINKD
YAYSMGVIISSNYFQIGIANLKCEVLISETHSFEPPVSAYDILEKIKDHMIEIIWKHNFSRDKFIGLGFSITGLIKDKEL
GIVNDSYGSWIEKDVPVKRILEEYFSLTVYLESYVKNLSLAEFMGKNIDNIMFFDYTDTAELSIWSGGNVYPGFNNKSGM
VSHMIIDYEGEKNCPTCGNKGCVNMLISNFALQRLISKEFMNGEIPELYEKYEGRLKKVTIYDIFSLYEKYDFINKIMQD
TVKYLAIIIINIQRMLDFNYLVLYGQSFKLKAFFDLLKEEIKKLNKENIVLKLSSLDTEVSVVGPASSVIFNKFYLTGGD
ID

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=255, Percent_Identity=25.0980392156863, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 46082; Mature: 46082

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGENMVSIRGGNRRKILLSLKNMQYSRTDLARKLSLTNAAVTILTNQMIKENLLIEVGS
CCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RVSDVKKHGRKEILLDINKDYAYSMGVIISSNYFQIGIANLKCEVLISETHSFEPPVSAY
HHHHHHHCCCEEEEEECCCCCEEEEEEEEECCEEEEEEECEEEEEEEECCCCCCCCCHHH
DILEKIKDHMIEIIWKHNFSRDKFIGLGFSITGLIKDKELGIVNDSYGSWIEKDVPVKRI
HHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEEEEECCCCCEEECCCCCCCCCCCCHHHH
LEEYFSLTVYLESYVKNLSLAEFMGKNIDNIMFFDYTDTAELSIWSGGNVYPGFNNKSGM
HHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCC
VSHMIIDYEGEKNCPTCGNKGCVNMLISNFALQRLISKEFMNGEIPELYEKYEGRLKKVT
EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEE
IYDIFSLYEKYDFINKIMQDTVKYLAIIIINIQRMLDFNYLVLYGQSFKLKAFFDLLKEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH
IKKLNKENIVLKLSSLDTEVSVVGPASSVIFNKFYLTGGDID
HHHCCCCCEEEEEECCCCEEEEECCCHHHHEEEEEEECCCCC
>Mature Secondary Structure
MQGENMVSIRGGNRRKILLSLKNMQYSRTDLARKLSLTNAAVTILTNQMIKENLLIEVGS
CCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RVSDVKKHGRKEILLDINKDYAYSMGVIISSNYFQIGIANLKCEVLISETHSFEPPVSAY
HHHHHHHCCCEEEEEECCCCCEEEEEEEEECCEEEEEEECEEEEEEEECCCCCCCCCHHH
DILEKIKDHMIEIIWKHNFSRDKFIGLGFSITGLIKDKELGIVNDSYGSWIEKDVPVKRI
HHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEEEEECCCCCEEECCCCCCCCCCCCHHHH
LEEYFSLTVYLESYVKNLSLAEFMGKNIDNIMFFDYTDTAELSIWSGGNVYPGFNNKSGM
HHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCC
VSHMIIDYEGEKNCPTCGNKGCVNMLISNFALQRLISKEFMNGEIPELYEKYEGRLKKVT
EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEE
IYDIFSLYEKYDFINKIMQDTVKYLAIIIINIQRMLDFNYLVLYGQSFKLKAFFDLLKEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH
IKKLNKENIVLKLSSLDTEVSVVGPASSVIFNKFYLTGGDID
HHHCCCCCEEEEEECCCCEEEEECCCHHHHEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]