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The map label for this gene is 154248642

Identifier: 154248642

GI number: 154248642

Start: 5240029

End: 5241453

Strand: Reverse

Name: 154248642

Synonym: Xaut_4724

Alternate gene names: NA

Gene position: 5241453-5240029 (Counterclockwise)

Preceding gene: 154248651

Following gene: 154248641

Centisome position: 98.73

GC content: 69.54

Gene sequence:

>1425_bases
ATGCGTCAGAAGATCTATGCCGGCCATGCGGTGCGGCGGCTCAGGGAAAAGCTGGGGCTCAAGCAGAGCGAGCTGGCCCA
GCGCCTCGCGGTCTCGCCATCCTACATCAACCAGATCGAGAGCAACCAGCGCCCGCTGACCGCCTCGATCCTCATCGCCA
TCTCGCGCACCTTCGCCGTGGATATCACCTCCTTCGGCGCGGAGGACCTCGACCGGCTGGTGGCCGACCTGCGCGAGACC
GCGGCCGACCCGCTGTTCAAGGATCTCGACCTCGGCCTTCAGGACATGAAGGCGGTGGCCAACCTCTCCCCGGCCTTCGC
CCATGCCTTCCTGCGCATGCACGTGGCGCTGCGGCGCACGGCGGAGTGGCGCGCCTCCCTCGACGACATGCTCACCGCAG
GCGTGGCGCCGGGGGCGGACGAGGCCAAGCTGATCCCCTACGAGGAAGTCCGCGACTTCTTCCACTATATCGACAATTAC
GTGGATCCCCTCGACCGCGCGGCGGAGGCTGCCGCCTCCAGCCTCGGCATCCTGGAAGGCGCGGATCCCGCCGCCGCCTT
CGCCGCGCATCTCGCCCGCCGCCATAATGTGCAGGTGGAGGTGGGGCCGGCCGACCCGGACGCGCCGCTGTCACGCTTCG
ATCCACGCTTGCGGCGCCTGGTGCTGTCGGGTGTGCTGTCAACGCCGACGCGGGCGTTCCGCATCGCCGCCACCATCGCC
CAGCTGGAGCACGGCGCGCTGGTGGAGGCGACGGTCGCCTCCGGAGCCTTCCGCAGCCAGACCGCCACGGAGATCTGCCG
GCTGGCGCTGCATAATTATTTCGCCGGCGCGCTGATGCTGCCCTATCGCCGGTTTCATGACCTCGCCCGGCGGCTGCGCC
ACGACCTCGACCGCCTGGTGCTGGAGACCGGGGCCAGCCTGGAGCAGGTGTGCCATCGCCTGTCCACGCTGCAGCGGCCG
GGGGCAAAGGGGGTGCCCTTCTATTTCGCCAAGGTGGATCGCGCCGGCAACATCACCAAGCGCCATTCGGCCACGCGCTT
CCAGTTCGCCCGCCACGGCGGGGCCTGCGCCGCCTGGAACGTGCACGAGGCGTTCGAGATGCCGGGGCGCACGCTGGTAC
AGGTGGGTGAGATGCCCGACGGCGCACGCTACATCTGTCTCGCCCGTGCCGTGGTCAGCCCCTCCCTGCGCCACGGCCAG
CCCTCGCGGGCCTATGCCTTCGGCCTCGGCTGCGAGGTCGCGTTCGCCCATGACACCGTCTATGCGGACGGGCTGGACCT
GAAGGCCGCGCCGGTGGCCAAGCTGGGTGTCTCCTGCCGCATCTGCCCGCGCCGCGACTGCGACCTGCGGGCCTTCCCGC
CGCTGGACCGGGAGATCCGCATCGACGAGAACGTGCGGGATATCGTTCCGTTTACCATCTCCTGA

Upstream 100 bases:

>100_bases
TCGCTGCTGTCGGCTAACAGGAGTTGCGGGCGTTGGGAATATGTGAAAAATTCACGTTGTTTATTGTGAAGAATTCGCAA
TCCCGAAGTCGGGGCCGCCC

Downstream 100 bases:

>100_bases
CGCAATTGCGCCTTTCTGCCGCTTAGGAATGGCCCTGCCTTGGCACATGAAACGCCATGAGGGCGGAGATAAACTAAGTG
CATCGACTCTCTGTCGAGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MRQKIYAGHAVRRLREKLGLKQSELAQRLAVSPSYINQIESNQRPLTASILIAISRTFAVDITSFGAEDLDRLVADLRET
AADPLFKDLDLGLQDMKAVANLSPAFAHAFLRMHVALRRTAEWRASLDDMLTAGVAPGADEAKLIPYEEVRDFFHYIDNY
VDPLDRAAEAAASSLGILEGADPAAAFAAHLARRHNVQVEVGPADPDAPLSRFDPRLRRLVLSGVLSTPTRAFRIAATIA
QLEHGALVEATVASGAFRSQTATEICRLALHNYFAGALMLPYRRFHDLARRLRHDLDRLVLETGASLEQVCHRLSTLQRP
GAKGVPFYFAKVDRAGNITKRHSATRFQFARHGGACAAWNVHEAFEMPGRTLVQVGEMPDGARYICLARAVVSPSLRHGQ
PSRAYAFGLGCEVAFAHDTVYADGLDLKAAPVAKLGVSCRICPRRDCDLRAFPPLDREIRIDENVRDIVPFTIS

Sequences:

>Translated_474_residues
MRQKIYAGHAVRRLREKLGLKQSELAQRLAVSPSYINQIESNQRPLTASILIAISRTFAVDITSFGAEDLDRLVADLRET
AADPLFKDLDLGLQDMKAVANLSPAFAHAFLRMHVALRRTAEWRASLDDMLTAGVAPGADEAKLIPYEEVRDFFHYIDNY
VDPLDRAAEAAASSLGILEGADPAAAFAAHLARRHNVQVEVGPADPDAPLSRFDPRLRRLVLSGVLSTPTRAFRIAATIA
QLEHGALVEATVASGAFRSQTATEICRLALHNYFAGALMLPYRRFHDLARRLRHDLDRLVLETGASLEQVCHRLSTLQRP
GAKGVPFYFAKVDRAGNITKRHSATRFQFARHGGACAAWNVHEAFEMPGRTLVQVGEMPDGARYICLARAVVSPSLRHGQ
PSRAYAFGLGCEVAFAHDTVYADGLDLKAAPVAKLGVSCRICPRRDCDLRAFPPLDREIRIDENVRDIVPFTIS
>Mature_474_residues
MRQKIYAGHAVRRLREKLGLKQSELAQRLAVSPSYINQIESNQRPLTASILIAISRTFAVDITSFGAEDLDRLVADLRET
AADPLFKDLDLGLQDMKAVANLSPAFAHAFLRMHVALRRTAEWRASLDDMLTAGVAPGADEAKLIPYEEVRDFFHYIDNY
VDPLDRAAEAAASSLGILEGADPAAAFAAHLARRHNVQVEVGPADPDAPLSRFDPRLRRLVLSGVLSTPTRAFRIAATIA
QLEHGALVEATVASGAFRSQTATEICRLALHNYFAGALMLPYRRFHDLARRLRHDLDRLVLETGASLEQVCHRLSTLQRP
GAKGVPFYFAKVDRAGNITKRHSATRFQFARHGGACAAWNVHEAFEMPGRTLVQVGEMPDGARYICLARAVVSPSLRHGQ
PSRAYAFGLGCEVAFAHDTVYADGLDLKAAPVAKLGVSCRICPRRDCDLRAFPPLDREIRIDENVRDIVPFTIS

Specific function: Unknown

COG id: COG3800

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018653
- InterPro:   IPR010359
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 52215; Mature: 52215

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQKIYAGHAVRRLREKLGLKQSELAQRLAVSPSYINQIESNQRPLTASILIAISRTFAV
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHEE
DITSFGAEDLDRLVADLRETAADPLFKDLDLGLQDMKAVANLSPAFAHAFLRMHVALRRT
EHHHCCHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
AEWRASLDDMLTAGVAPGADEAKLIPYEEVRDFFHYIDNYVDPLDRAAEAAASSLGILEG
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCC
ADPAAAFAAHLARRHNVQVEVGPADPDAPLSRFDPRLRRLVLSGVLSTPTRAFRIAATIA
CCHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHH
QLEHGALVEATVASGAFRSQTATEICRLALHNYFAGALMLPYRRFHDLARRLRHDLDRLV
HHHCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LETGASLEQVCHRLSTLQRPGAKGVPFYFAKVDRAGNITKRHSATRFQFARHGGACAAWN
HHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHCCCCEEECC
VHEAFEMPGRTLVQVGEMPDGARYICLARAVVSPSLRHGQPSRAYAFGLGCEVAFAHDTV
HHHHHHCCCHHEEEECCCCCCCHHHHHHHHHHCCHHHCCCCCCEEEEECCCEEEEECCEE
YADGLDLKAAPVAKLGVSCRICPRRDCDLRAFPPLDREIRIDENVRDIVPFTIS
EECCCCCCCCCHHHHCCEEEECCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCC
>Mature Secondary Structure
MRQKIYAGHAVRRLREKLGLKQSELAQRLAVSPSYINQIESNQRPLTASILIAISRTFAV
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHEE
DITSFGAEDLDRLVADLRETAADPLFKDLDLGLQDMKAVANLSPAFAHAFLRMHVALRRT
EHHHCCHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
AEWRASLDDMLTAGVAPGADEAKLIPYEEVRDFFHYIDNYVDPLDRAAEAAASSLGILEG
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCC
ADPAAAFAAHLARRHNVQVEVGPADPDAPLSRFDPRLRRLVLSGVLSTPTRAFRIAATIA
CCHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHH
QLEHGALVEATVASGAFRSQTATEICRLALHNYFAGALMLPYRRFHDLARRLRHDLDRLV
HHHCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LETGASLEQVCHRLSTLQRPGAKGVPFYFAKVDRAGNITKRHSATRFQFARHGGACAAWN
HHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHCCCCEEECC
VHEAFEMPGRTLVQVGEMPDGARYICLARAVVSPSLRHGQPSRAYAFGLGCEVAFAHDTV
HHHHHHCCCHHEEEECCCCCCCHHHHHHHHHHCCHHHCCCCCCEEEEECCCEEEEECCEE
YADGLDLKAAPVAKLGVSCRICPRRDCDLRAFPPLDREIRIDENVRDIVPFTIS
EECCCCCCCCCHHHHCCEEEECCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]