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The map label for this gene is yhcS [C]

Identifier: 154248617

GI number: 154248617

Start: 5210683

End: 5211645

Strand: Reverse

Name: yhcS [C]

Synonym: Xaut_4699

Alternate gene names: 154248617

Gene position: 5211645-5210683 (Counterclockwise)

Preceding gene: 154248629

Following gene: 154248608

Centisome position: 98.17

GC content: 72.59

Gene sequence:

>963_bases
GTGCGCGAGCTTTTTCCCTTCGATCTCAAGACGCTGGAGATCTTCCTCGCGGTCTGCGAAGCCGGTGCCATGGCCGGCGC
GGCGCGGCGGCTCGGCCTGACCCAGCCGGCGGTGTCGCAGGCGGTGGCGGAGCTGGAGGGGCGCATGGGCGTCGCCTTGT
TCGATCGCAGCGTGCGGCCACTGGGGCTCACGGCGGCGGGCGGGGTGCTGCGGCAGAAGGCGAGCGCGCTGCTCTCCGAG
GCGCGGCAGATCGTGCCCGCTTTGAAGGAGACCGAGCATGGCCGCCTGCCGCTGATCCGCGCCGGGCTGGTGGATTCGCT
CTCCCGCGCCCTGTCGGCGCCGCTGGCCGGGCGTCTGTCCGGCGTGGCGGAGGAGGTGTCGCTGCTGGCGGGCCTCACCG
CCTCCCACGCCAGTGCGCTGCTGTCGCGCCAGCTCGACCTTCTGGTGGGCGTGGACGAACTCGCCGATATCGAGGGGCTT
GAGCGCTTCCCCCTCTTCACCGAGCCCTATGTGCTGCTGCTCCCGGACGGCGAGGCCGCCCCGGCGCGGGTGGAGGATCT
GGCGCGGCTCGTCCGCCGCCTGCCGCTGGTGCGCTTCTCGGCGCGTTCCAAGACCGGCATCGAGGTGGAACGGCACCTGC
GGCGCCTGAAGCTCGATCTGCCGCGCCGGCTGGAATTCGACACGCCCTATGGCGTCACCGCCACGGTGGCGGCGGGGGAG
GGCGTGGCGGTGACCACCCCGCTCTGCCTGTTTGAGGCGGGGGTGGATTTTGCCCGCTTTTCCTGCGCGCCATTGCCGGG
GCCTGCCGTCTCCCGCAACCTCACCCTGATCGCGCGGCGGCAGGAGCTGGGGCGGGTGCCGCGGGAGGTCGCCGCCTTCT
GCCGGGAGACGCTGGAGGACGACGTGCTGCCGGGCCTTCGGGCCGCCTTGCCGTGGCTGGAGACGCTGGCGACCACCGAA
TAA

Upstream 100 bases:

>100_bases
GCTGGCTTCCGGACCCCTCGTAAGCCTCTATACCGTGCCGTCGAACGAGGATTAATATAAATCCTGCTTATAGTGTGACC
CTGAGCCTCGGACCGGCATT

Downstream 100 bases:

>100_bases
GCACGGTTCTGCGGGACCCGCCGTGCCAACGACAAAGGCCCCGGAGCTGCCTCCGGGGCCCGTCGCGAGCGGGAGCTATT
CCGCAGCTCAGATATCCAGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: LysR Family Transcriptional Regulator; Transcriptional Regulator; LysR Family Regulatory Protein; Hydrogen Peroxide-Inducible Genes Activator

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MRELFPFDLKTLEIFLAVCEAGAMAGAARRLGLTQPAVSQAVAELEGRMGVALFDRSVRPLGLTAAGGVLRQKASALLSE
ARQIVPALKETEHGRLPLIRAGLVDSLSRALSAPLAGRLSGVAEEVSLLAGLTASHASALLSRQLDLLVGVDELADIEGL
ERFPLFTEPYVLLLPDGEAAPARVEDLARLVRRLPLVRFSARSKTGIEVERHLRRLKLDLPRRLEFDTPYGVTATVAAGE
GVAVTTPLCLFEAGVDFARFSCAPLPGPAVSRNLTLIARRQELGRVPREVAAFCRETLEDDVLPGLRAALPWLETLATTE

Sequences:

>Translated_320_residues
MRELFPFDLKTLEIFLAVCEAGAMAGAARRLGLTQPAVSQAVAELEGRMGVALFDRSVRPLGLTAAGGVLRQKASALLSE
ARQIVPALKETEHGRLPLIRAGLVDSLSRALSAPLAGRLSGVAEEVSLLAGLTASHASALLSRQLDLLVGVDELADIEGL
ERFPLFTEPYVLLLPDGEAAPARVEDLARLVRRLPLVRFSARSKTGIEVERHLRRLKLDLPRRLEFDTPYGVTATVAAGE
GVAVTTPLCLFEAGVDFARFSCAPLPGPAVSRNLTLIARRQELGRVPREVAAFCRETLEDDVLPGLRAALPWLETLATTE
>Mature_320_residues
MRELFPFDLKTLEIFLAVCEAGAMAGAARRLGLTQPAVSQAVAELEGRMGVALFDRSVRPLGLTAAGGVLRQKASALLSE
ARQIVPALKETEHGRLPLIRAGLVDSLSRALSAPLAGRLSGVAEEVSLLAGLTASHASALLSRQLDLLVGVDELADIEGL
ERFPLFTEPYVLLLPDGEAAPARVEDLARLVRRLPLVRFSARSKTGIEVERHLRRLKLDLPRRLEFDTPYGVTATVAAGE
GVAVTTPLCLFEAGVDFARFSCAPLPGPAVSRNLTLIARRQELGRVPREVAAFCRETLEDDVLPGLRAALPWLETLATTE

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789639, Length=152, Percent_Identity=28.9473684210526, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1790262, Length=187, Percent_Identity=32.620320855615, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI157672245, Length=71, Percent_Identity=49.2957746478873, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI2367136, Length=148, Percent_Identity=31.0810810810811, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34390; Mature: 34390

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50931 HTH_LYSR ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRELFPFDLKTLEIFLAVCEAGAMAGAARRLGLTQPAVSQAVAELEGRMGVALFDRSVRP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHCCCCCC
LGLTAAGGVLRQKASALLSEARQIVPALKETEHGRLPLIRAGLVDSLSRALSAPLAGRLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
GVAEEVSLLAGLTASHASALLSRQLDLLVGVDELADIEGLERFPLFTEPYVLLLPDGEAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHCCCCCCCEEEEEECCCCC
PARVEDLARLVRRLPLVRFSARSKTGIEVERHLRRLKLDLPRRLEFDTPYGVTATVAAGE
CHHHHHHHHHHHHCCHHEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCC
GVAVTTPLCLFEAGVDFARFSCAPLPGPAVSRNLTLIARRQELGRVPREVAAFCRETLED
CEEEHHHHHHHHHCCCHHHHCCCCCCCCHHCCCHHHEEEHHHHCCCHHHHHHHHHHHHHH
DVLPGLRAALPWLETLATTE
HCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRELFPFDLKTLEIFLAVCEAGAMAGAARRLGLTQPAVSQAVAELEGRMGVALFDRSVRP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHCCCCCC
LGLTAAGGVLRQKASALLSEARQIVPALKETEHGRLPLIRAGLVDSLSRALSAPLAGRLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
GVAEEVSLLAGLTASHASALLSRQLDLLVGVDELADIEGLERFPLFTEPYVLLLPDGEAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHCCCCCCCEEEEEECCCCC
PARVEDLARLVRRLPLVRFSARSKTGIEVERHLRRLKLDLPRRLEFDTPYGVTATVAAGE
CHHHHHHHHHHHHCCHHEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCC
GVAVTTPLCLFEAGVDFARFSCAPLPGPAVSRNLTLIARRQELGRVPREVAAFCRETLED
CEEEHHHHHHHHHCCCHHHHCCCCCCCCHHCCCHHHEEEHHHHCCCHHHHHHHHHHHHHH
DVLPGLRAALPWLETLATTE
HCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA