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The map label for this gene is ybdK [C]

Identifier: 154248026

GI number: 154248026

Start: 4541528

End: 4542697

Strand: Direct

Name: ybdK [C]

Synonym: Xaut_4105

Alternate gene names: 154248026

Gene position: 4541528-4542697 (Clockwise)

Preceding gene: 154248025

Following gene: 154248028

Centisome position: 85.55

GC content: 67.52

Gene sequence:

>1170_bases
ATGGGCCTTACTGGCTCGCCCTCTGGGCAATTTATGCGGGAGGCCTGCGTGTCGCACGACTACAGCTTCGGAATCGAAGA
AGAGTTCTTCGTCGTGGACGCGCAGACGAATTCGGTCCAAAGGCGCATGCCCTCGGGCTTTTTCGACCAGCTGAAGGACA
TTCTGGGCGACAGCGTCTCGGTTGAGATGCTGCAATCCCAGCTGGAGCTTGCAACCCGCCCGTCCACCGGCGCAGGCAGC
GCGCTCGACCAGCTGAAGGGCCTGCGCCGAACCGTGGCGGACGTGGCGGCGGAGCACGGGCTGGGGCTCATCGCTGCCGG
CACCCATCCCACCGCCACCTGGGACGGGGTGCGCGCCACCAGGGCCAACCGCTTCGACGGCGTCATGAACGACCTGAAGA
TGCTGGGCGAGCGCAGCATGGTGTGCGGCCTGCACGTGCATGTGGAATTGCCCGACCCCGACGAGCGGGTGGACGTGATG
CGCCGCATGGTGCCCTACATCCCCCATTTCATCGCCCTCTCCACCTCGTCCCCGTTCTGGGGGGCCAAGCAGACCGGACT
CATGGGCTATCGGCTGGCGGCCTTTGACGAGCTGCCCCGCACCGGCCTGCCCGAGATGTTCGAGACCGCCGCCGCCTACG
AGCGCTACATCGACGCCATGGTGGAGGCGCGGGCCATCACTGATTCAAGCTATGTGTGGTGGGCCATCCGCCCCTCACGC
CAGCTGCCCACGCTGGAGCTGCGCGCGCCCGACAGTTGCACCCGCATCGAGGACACTGTGGCGATCGCGGCGCTGTATCG
CGCGCTGGTGCGCTTCCTGGTGCGCAATCGGCACCACAACAAGGATGTGGGCACGGTGGACCGGGCCATCGCCGACGAGA
ACAAGTGGCGCGCCCAGCGCTACGGCATCCACGGCTCGTTCGTGGATCTCGCCCAGCGCCGCGCGGTTTCGGTGCGCGAT
GCGGTGGACGGCCTCGTCCATCTGGTGGGGGAGGATGCGGAGGCCCTCGGCTGTCTCGATGCCCTCCTGCACGTGCGCAC
CATCGCCGAGGCGGGCACCAGTGCCGACGTGCAACTGGCGGTCTTCCAGGAAGCCCATCACCGCACTGGCAAGCGCGGCG
AGGCCCTCGACGCGGTGAAGACCTGGCTGGCCAACGCCACGCTGCAGTGA

Upstream 100 bases:

>100_bases
ATACATTAAGATATTGAAAGAGTAGGGTAGACGACGGCCTTCTCGTCGTGCCGCATTTTCGTCGCCTTTCGCGTCAGTCT
GTCCGGAACTTGGCCGTTGG

Downstream 100 bases:

>100_bases
GGGGGGCCGGGAACGATCATCCCCGGCCCGAAACCTCACAGCTGGAACGGGACCACGGTCTGCTGCTGCACGCCGAGGCC
GGCGATGCCGACGCGCATCA

Product: glutamate--cysteine ligase GCS2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MGLTGSPSGQFMREACVSHDYSFGIEEEFFVVDAQTNSVQRRMPSGFFDQLKDILGDSVSVEMLQSQLELATRPSTGAGS
ALDQLKGLRRTVADVAAEHGLGLIAAGTHPTATWDGVRATRANRFDGVMNDLKMLGERSMVCGLHVHVELPDPDERVDVM
RRMVPYIPHFIALSTSSPFWGAKQTGLMGYRLAAFDELPRTGLPEMFETAAAYERYIDAMVEARAITDSSYVWWAIRPSR
QLPTLELRAPDSCTRIEDTVAIAALYRALVRFLVRNRHHNKDVGTVDRAIADENKWRAQRYGIHGSFVDLAQRRAVSVRD
AVDGLVHLVGEDAEALGCLDALLHVRTIAEAGTSADVQLAVFQEAHHRTGKRGEALDAVKTWLANATLQ

Sequences:

>Translated_389_residues
MGLTGSPSGQFMREACVSHDYSFGIEEEFFVVDAQTNSVQRRMPSGFFDQLKDILGDSVSVEMLQSQLELATRPSTGAGS
ALDQLKGLRRTVADVAAEHGLGLIAAGTHPTATWDGVRATRANRFDGVMNDLKMLGERSMVCGLHVHVELPDPDERVDVM
RRMVPYIPHFIALSTSSPFWGAKQTGLMGYRLAAFDELPRTGLPEMFETAAAYERYIDAMVEARAITDSSYVWWAIRPSR
QLPTLELRAPDSCTRIEDTVAIAALYRALVRFLVRNRHHNKDVGTVDRAIADENKWRAQRYGIHGSFVDLAQRRAVSVRD
AVDGLVHLVGEDAEALGCLDALLHVRTIAEAGTSADVQLAVFQEAHHRTGKRGEALDAVKTWLANATLQ
>Mature_388_residues
GLTGSPSGQFMREACVSHDYSFGIEEEFFVVDAQTNSVQRRMPSGFFDQLKDILGDSVSVEMLQSQLELATRPSTGAGSA
LDQLKGLRRTVADVAAEHGLGLIAAGTHPTATWDGVRATRANRFDGVMNDLKMLGERSMVCGLHVHVELPDPDERVDVMR
RMVPYIPHFIALSTSSPFWGAKQTGLMGYRLAAFDELPRTGLPEMFETAAAYERYIDAMVEARAITDSSYVWWAIRPSRQ
LPTLELRAPDSCTRIEDTVAIAALYRALVRFLVRNRHHNKDVGTVDRAIADENKWRAQRYGIHGSFVDLAQRRAVSVRDA
VDGLVHLVGEDAEALGCLDALLHVRTIAEAGTSADVQLAVFQEAHHRTGKRGEALDAVKTWLANATLQ

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=297, Percent_Identity=26.9360269360269, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 42917; Mature: 42786

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLTGSPSGQFMREACVSHDYSFGIEEEFFVVDAQTNSVQRRMPSGFFDQLKDILGDSVS
CCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHCCCCHHHHHHHHHCCCHH
VEMLQSQLELATRPSTGAGSALDQLKGLRRTVADVAAEHGLGLIAAGTHPTATWDGVRAT
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHH
RANRFDGVMNDLKMLGERSMVCGLHVHVELPDPDERVDVMRRMVPYIPHFIALSTSSPFW
HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
GAKQTGLMGYRLAAFDELPRTGLPEMFETAAAYERYIDAMVEARAITDSSYVWWAIRPSR
CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
QLPTLELRAPDSCTRIEDTVAIAALYRALVRFLVRNRHHNKDVGTVDRAIADENKWRAQR
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHH
YGIHGSFVDLAQRRAVSVRDAVDGLVHLVGEDAEALGCLDALLHVRTIAEAGTSADVQLA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHH
VFQEAHHRTGKRGEALDAVKTWLANATLQ
HHHHHHHCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GLTGSPSGQFMREACVSHDYSFGIEEEFFVVDAQTNSVQRRMPSGFFDQLKDILGDSVS
CCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHCCCCHHHHHHHHHCCCHH
VEMLQSQLELATRPSTGAGSALDQLKGLRRTVADVAAEHGLGLIAAGTHPTATWDGVRAT
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHH
RANRFDGVMNDLKMLGERSMVCGLHVHVELPDPDERVDVMRRMVPYIPHFIALSTSSPFW
HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
GAKQTGLMGYRLAAFDELPRTGLPEMFETAAAYERYIDAMVEARAITDSSYVWWAIRPSR
CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
QLPTLELRAPDSCTRIEDTVAIAALYRALVRFLVRNRHHNKDVGTVDRAIADENKWRAQR
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHH
YGIHGSFVDLAQRRAVSVRDAVDGLVHLVGEDAEALGCLDALLHVRTIAEAGTSADVQLA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHH
VFQEAHHRTGKRGEALDAVKTWLANATLQ
HHHHHHHCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA