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The map label for this gene is yciR [C]

Identifier: 154248006

GI number: 154248006

Start: 4523496

End: 4525697

Strand: Direct

Name: yciR [C]

Synonym: Xaut_4085

Alternate gene names: 154248006

Gene position: 4523496-4525697 (Clockwise)

Preceding gene: 154248005

Following gene: 154248007

Centisome position: 85.21

GC content: 69.12

Gene sequence:

>2202_bases
ATGAAGGAGGGCGGTATCATTCCCCGTCGCCAGGGTAGCCCCGCTTATCGTTCCCTCCTGGCGGGACTGATGGCGCTCGC
GCTTTTGGTCGCGGGTCTGGTCACGGTCTTCGTGCTGGCGGGGCTGCGCCAGGACGACAAGGCGCGCACCCGCGAGCGGG
CCGCTCTTCTCTCCTCCCTGCGCGCCCGCGAAACGGTGATGGAGCAGGCGCTTGTCGCTACCAATGACGAGCGGCAAGCC
CTGCGCCAACTGGTGCTGGGGGACATGACTCCCCTGCATCGGCACTTCGGCCAGAAGCTCAATGACGGATTCGGCTTCGA
GTTCGTCTACATCACCGACGCCAGGGGCCGTGTCGTCTATTCCTCCGAGCGGGGCGAGCAGAATGAGCTGCGGGCCTACA
GCTGGATCCGCCCCGCCATCGAGCGGGCGCTGGCCGATGGGCAGAAGGCAGCGCTCTCGGGCGTGGTGGCCACGGACGAC
GCGGCCGGATTGATGGTGGCCCGCCCCTTCGACGAAAAGGTCGAGGGGCTCGACCTGGCCCAGCCGCTGGTGGCCATCAC
GGTCGATATCATCGACCCTGAGTTCCTGCGGATGGTGGGCGCTCCCGCGAGCCTTGAGGAGGTGGAGCTGATCCACCGGC
CGCTCCATGGCGGCCGGGAAGCGGGTGTCTTCATCCCCAACCTCTATGACGGCTCGGAGGCGGAGCTGGTGTGGCGGGGC
GCGCATCCCGGCAGCAAGATGCTGTGGACGCTGATGCCGGCCGCCGCTGTGCTCGCCAGCCTTCTCGCCGTGCTGTTCCT
GGTGCTCATGATCCGGGCCCGCCGGATGGCGGCCGACCTTGTCGCCAGCGAGGCCAAGGCGCGGGAGCTGGCCGCGCGCG
ACTACCTGACCGGCCTGCTGAACCGGGGCGCCTTCATCGAGGCGCTGGACGCCGCCATCGCCCGGCGCCGGAATGGGGAG
ACGCTGGCACTGCTGTTCGTCGACCTCGACGACTTCAAGGTCATCAATGACAGCGCCGGCCATGCCGCCGGCGACGACCT
CCTGCGCGCCTTCGCCCGGCGGACCGAGGAGGCGCTGGGGGAGGGGAGCGTTGTTGCGCGCTTTGGCGGCGACGAGTTCG
TGGCCATGGTCCCCTGCCGGAACGACGCGGATCTTGATCACGCCGTGGAGCGGCTGTTCAGGGAACTGGCGCCGCCGGTC
CTGCTGGAGCAGGGCGGCGACCTGAGCCTGAGCGCCTGCGTGGGCGCGGCGCGCCTGCCCCGGGACGCCGCCACCGGCGC
GGAGCTGATGCGGCTCGCCGATGTCGCCCTCTACCGGGCCAAGGCCGACGGCACCGGCCTCTACCGTCGGTTCGAGCCGG
GGTTCGACGCGGAGCGGATCGAGCATCGGCGTATCGAGACGGAACTGGCGGCGGCGCTGGACAAGCGCGAAATCACGTTG
GTCTACCAGCCCCAGGTGGATGTGGAGAGCGAGCGCGTCGTCGGCTTCGAGGCGCTGGCCCGCTGGGACCATCCCACCCA
GGGGCGGCTCCTGCCGGGCGCCTTTCTGGCTGTGGCCGAGACCTCACGCCTCATGGGGCGGTTCGATGCCTATGTGTTGC
GCATGGCCCTGATGGAAGCGCGGGCCCTGCCTGAGGTGACGCTGTCGGTGAACATGTCGGCGCTGAACCTGCGGCAGGGG
GCCATCTTCGGCATGGTGGTCACGGCACTGGCCGAAACCGGGTTCAATCCGGCACGGCTGGAGATCGAGATCACCGAAAG
CGCGATCCTCGACGCCGCGAGCGACGGCCAGGAGGCACTGCAGAAACTGCGGGACATGGGGGTACGGATCGCCCTCGATG
ATTTCGGCACCGGCCATGCCTCGCTGGTTCACCTGCGGCGCTTCCCCATCACCAAGATCAAGATCGACAAGTCCTTCATC
CTCGACATGGCCACCGACCGGGATGCGTCGGCCATCGTGGAATATGTGATCCGGCTCGGCCGCTCCCTCGGCATCACCCT
GACCGCGGAAGGGGTGGAGACGCGCGAGCAGTTGCGCTTCCTCAGGGCCTTCGGCGCCCAGCAGGCGCAGGGCTATCTGT
TCGCGCCGCCGCTGCCGCTTGCGGCCGCCATTGCCATGCTGGAGCGGCAGTCCGTGGCGCAGTCCGGTGTCGCGGCTGCC
GGTGTGGCAGCTACCGGCGCCGCCGTGTCGGGCCCGAGCTGA

Upstream 100 bases:

>100_bases
GGACAAATCGCCTATCCGCGGTACCGCGTGGATGATTTGACGCGCACCCACACCCGGCCCCATCCGCGGCTGATGACGTC
CCAGCCCATCACGGCAGCCC

Downstream 100 bases:

>100_bases
GATAACTTTTTTCTTTTCAAGAAAATTATTATCTCTATAAGGCGATGTGCTCCGGCCTGGGGCATCTGCGGCGTGGCGGG
ACATTGCCTGCACTGCGGCG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 733; Mature: 733

Protein sequence:

>733_residues
MKEGGIIPRRQGSPAYRSLLAGLMALALLVAGLVTVFVLAGLRQDDKARTRERAALLSSLRARETVMEQALVATNDERQA
LRQLVLGDMTPLHRHFGQKLNDGFGFEFVYITDARGRVVYSSERGEQNELRAYSWIRPAIERALADGQKAALSGVVATDD
AAGLMVARPFDEKVEGLDLAQPLVAITVDIIDPEFLRMVGAPASLEEVELIHRPLHGGREAGVFIPNLYDGSEAELVWRG
AHPGSKMLWTLMPAAAVLASLLAVLFLVLMIRARRMAADLVASEAKARELAARDYLTGLLNRGAFIEALDAAIARRRNGE
TLALLFVDLDDFKVINDSAGHAAGDDLLRAFARRTEEALGEGSVVARFGGDEFVAMVPCRNDADLDHAVERLFRELAPPV
LLEQGGDLSLSACVGAARLPRDAATGAELMRLADVALYRAKADGTGLYRRFEPGFDAERIEHRRIETELAAALDKREITL
VYQPQVDVESERVVGFEALARWDHPTQGRLLPGAFLAVAETSRLMGRFDAYVLRMALMEARALPEVTLSVNMSALNLRQG
AIFGMVVTALAETGFNPARLEIEITESAILDAASDGQEALQKLRDMGVRIALDDFGTGHASLVHLRRFPITKIKIDKSFI
LDMATDRDASAIVEYVIRLGRSLGITLTAEGVETREQLRFLRAFGAQQAQGYLFAPPLPLAAAIAMLERQSVAQSGVAAA
GVAATGAAVSGPS

Sequences:

>Translated_733_residues
MKEGGIIPRRQGSPAYRSLLAGLMALALLVAGLVTVFVLAGLRQDDKARTRERAALLSSLRARETVMEQALVATNDERQA
LRQLVLGDMTPLHRHFGQKLNDGFGFEFVYITDARGRVVYSSERGEQNELRAYSWIRPAIERALADGQKAALSGVVATDD
AAGLMVARPFDEKVEGLDLAQPLVAITVDIIDPEFLRMVGAPASLEEVELIHRPLHGGREAGVFIPNLYDGSEAELVWRG
AHPGSKMLWTLMPAAAVLASLLAVLFLVLMIRARRMAADLVASEAKARELAARDYLTGLLNRGAFIEALDAAIARRRNGE
TLALLFVDLDDFKVINDSAGHAAGDDLLRAFARRTEEALGEGSVVARFGGDEFVAMVPCRNDADLDHAVERLFRELAPPV
LLEQGGDLSLSACVGAARLPRDAATGAELMRLADVALYRAKADGTGLYRRFEPGFDAERIEHRRIETELAAALDKREITL
VYQPQVDVESERVVGFEALARWDHPTQGRLLPGAFLAVAETSRLMGRFDAYVLRMALMEARALPEVTLSVNMSALNLRQG
AIFGMVVTALAETGFNPARLEIEITESAILDAASDGQEALQKLRDMGVRIALDDFGTGHASLVHLRRFPITKIKIDKSFI
LDMATDRDASAIVEYVIRLGRSLGITLTAEGVETREQLRFLRAFGAQQAQGYLFAPPLPLAAAIAMLERQSVAQSGVAAA
GVAATGAAVSGPS
>Mature_733_residues
MKEGGIIPRRQGSPAYRSLLAGLMALALLVAGLVTVFVLAGLRQDDKARTRERAALLSSLRARETVMEQALVATNDERQA
LRQLVLGDMTPLHRHFGQKLNDGFGFEFVYITDARGRVVYSSERGEQNELRAYSWIRPAIERALADGQKAALSGVVATDD
AAGLMVARPFDEKVEGLDLAQPLVAITVDIIDPEFLRMVGAPASLEEVELIHRPLHGGREAGVFIPNLYDGSEAELVWRG
AHPGSKMLWTLMPAAAVLASLLAVLFLVLMIRARRMAADLVASEAKARELAARDYLTGLLNRGAFIEALDAAIARRRNGE
TLALLFVDLDDFKVINDSAGHAAGDDLLRAFARRTEEALGEGSVVARFGGDEFVAMVPCRNDADLDHAVERLFRELAPPV
LLEQGGDLSLSACVGAARLPRDAATGAELMRLADVALYRAKADGTGLYRRFEPGFDAERIEHRRIETELAAALDKREITL
VYQPQVDVESERVVGFEALARWDHPTQGRLLPGAFLAVAETSRLMGRFDAYVLRMALMEARALPEVTLSVNMSALNLRQG
AIFGMVVTALAETGFNPARLEIEITESAILDAASDGQEALQKLRDMGVRIALDDFGTGHASLVHLRRFPITKIKIDKSFI
LDMATDRDASAIVEYVIRLGRSLGITLTAEGVETREQLRFLRAFGAQQAQGYLFAPPLPLAAAIAMLERQSVAQSGVAAA
GVAATGAAVSGPS

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=428, Percent_Identity=32.0093457943925, Blast_Score=221, Evalue=2e-58,
Organism=Escherichia coli, GI87081921, Length=438, Percent_Identity=30.365296803653, Blast_Score=195, Evalue=8e-51,
Organism=Escherichia coli, GI1788502, Length=255, Percent_Identity=32.9411764705882, Blast_Score=140, Evalue=4e-34,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=30.7692307692308, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI226510982, Length=451, Percent_Identity=28.159645232816, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI87081980, Length=240, Percent_Identity=34.1666666666667, Blast_Score=132, Evalue=7e-32,
Organism=Escherichia coli, GI1786507, Length=236, Percent_Identity=30.9322033898305, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1787055, Length=437, Percent_Identity=26.5446224256293, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=29.5081967213115, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=33.1932773109244, Blast_Score=116, Evalue=6e-27,
Organism=Escherichia coli, GI87082096, Length=236, Percent_Identity=33.8983050847458, Blast_Score=109, Evalue=7e-25,
Organism=Escherichia coli, GI1788381, Length=352, Percent_Identity=28.4090909090909, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1788849, Length=244, Percent_Identity=30.7377049180328, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787802, Length=155, Percent_Identity=36.7741935483871, Blast_Score=91, Evalue=4e-19,
Organism=Escherichia coli, GI1788956, Length=163, Percent_Identity=33.7423312883436, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787410, Length=222, Percent_Identity=27.9279279279279, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=30.9941520467836, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=33.1288343558282, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081881, Length=237, Percent_Identity=28.6919831223629, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI87081977, Length=153, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=8e-15,
Organism=Escherichia coli, GI87082007, Length=194, Percent_Identity=30.9278350515464, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787262, Length=207, Percent_Identity=27.536231884058, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1787816, Length=157, Percent_Identity=31.2101910828025, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 79401; Mature: 79401

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEGGIIPRRQGSPAYRSLLAGLMALALLVAGLVTVFVLAGLRQDDKARTRERAALLSSL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
RARETVMEQALVATNDERQALRQLVLGDMTPLHRHFGQKLNDGFGFEFVYITDARGRVVY
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEECCCCEEEE
SSERGEQNELRAYSWIRPAIERALADGQKAALSGVVATDDAAGLMVARPFDEKVEGLDLA
ECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEECCCCCCEEEECCCHHHHCCCCHH
QPLVAITVDIIDPEFLRMVGAPASLEEVELIHRPLHGGREAGVFIPNLYDGSEAELVWRG
CCHHEEEEECCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCEEEEEC
AHPGSKMLWTLMPAAAVLASLLAVLFLVLMIRARRMAADLVASEAKARELAARDYLTGLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRGAFIEALDAAIARRRNGETLALLFVDLDDFKVINDSAGHAAGDDLLRAFARRTEEALG
CCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHCC
EGSVVARFGGDEFVAMVPCRNDADLDHAVERLFRELAPPVLLEQGGDLSLSACVGAARLP
CCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCCEEHHHHHHHHHCC
RDAATGAELMRLADVALYRAKADGTGLYRRFEPGFDAERIEHRRIETELAAALDKREITL
CHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
VYQPQVDVESERVVGFEALARWDHPTQGRLLPGAFLAVAETSRLMGRFDAYVLRMALMEA
EECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RALPEVTLSVNMSALNLRQGAIFGMVVTALAETGFNPARLEIEITESAILDAASDGQEAL
HCCCCEEEEEECHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHCCCCCHHHHH
QKLRDMGVRIALDDFGTGHASLVHLRRFPITKIKIDKSFILDMATDRDASAIVEYVIRLG
HHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEEECHHHEEEECCCCCHHHHHHHHHHHC
RSLGITLTAEGVETREQLRFLRAFGAQQAQGYLFAPPLPLAAAIAMLERQSVAQSGVAAA
CCCCEEEEECCHHHHHHHHHHHHHCCHHCCCEEECCCHHHHHHHHHHHHHHHHHCCCHHH
GVAATGAAVSGPS
CHHHCCCCCCCCC
>Mature Secondary Structure
MKEGGIIPRRQGSPAYRSLLAGLMALALLVAGLVTVFVLAGLRQDDKARTRERAALLSSL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
RARETVMEQALVATNDERQALRQLVLGDMTPLHRHFGQKLNDGFGFEFVYITDARGRVVY
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEECCCCEEEE
SSERGEQNELRAYSWIRPAIERALADGQKAALSGVVATDDAAGLMVARPFDEKVEGLDLA
ECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEECCCCCCEEEECCCHHHHCCCCHH
QPLVAITVDIIDPEFLRMVGAPASLEEVELIHRPLHGGREAGVFIPNLYDGSEAELVWRG
CCHHEEEEECCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCEEEEEC
AHPGSKMLWTLMPAAAVLASLLAVLFLVLMIRARRMAADLVASEAKARELAARDYLTGLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRGAFIEALDAAIARRRNGETLALLFVDLDDFKVINDSAGHAAGDDLLRAFARRTEEALG
CCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHCC
EGSVVARFGGDEFVAMVPCRNDADLDHAVERLFRELAPPVLLEQGGDLSLSACVGAARLP
CCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCCEEHHHHHHHHHCC
RDAATGAELMRLADVALYRAKADGTGLYRRFEPGFDAERIEHRRIETELAAALDKREITL
CHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
VYQPQVDVESERVVGFEALARWDHPTQGRLLPGAFLAVAETSRLMGRFDAYVLRMALMEA
EECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RALPEVTLSVNMSALNLRQGAIFGMVVTALAETGFNPARLEIEITESAILDAASDGQEAL
HCCCCEEEEEECHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHCCCCCHHHHH
QKLRDMGVRIALDDFGTGHASLVHLRRFPITKIKIDKSFILDMATDRDASAIVEYVIRLG
HHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEEECHHHEEEECCCCCHHHHHHHHHHHC
RSLGITLTAEGVETREQLRFLRAFGAQQAQGYLFAPPLPLAAAIAMLERQSVAQSGVAAA
CCCCEEEEECCHHHHHHHHHHHHHCCHHCCCEEECCCHHHHHHHHHHHHHHHHHCCCHHH
GVAATGAAVSGPS
CHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]