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The map label for this gene is ywbI [H]

Identifier: 154247862

GI number: 154247862

Start: 4362477

End: 4363439

Strand: Direct

Name: ywbI [H]

Synonym: Xaut_3939

Alternate gene names: 154247862

Gene position: 4362477-4363439 (Clockwise)

Preceding gene: 154247861

Following gene: 154247864

Centisome position: 82.17

GC content: 70.2

Gene sequence:

>963_bases
ATGCCGCCGTCCCTCGGGGAGGGCGGCATCCGGGCCGTCAGGGACTGCTCCCTTCTCCAATACGATACGGGTCTCGCCAT
GGAATTCCGCCCGCTGCGCTCGTTCGTTGAGGTCGTCCGCCAGGGCGGCTTCTCGCAGGCCGCCAAGGCCGTGCTCACCA
GCCAGTCGGCCGTCAGCAAGGCCGTGAAGCAGCTGGAGGCGGAAGTAGGCGTCCCCCTGCTCGACCGCATGGGCCACCGC
AGCGTGCTGACCCCGGCGGGCGAGGTGGTCTATCGCCGCGCCGTGAAGCTGCTCGCCGACCGCGCCGACCTGTTGGCCGA
GCTGGACGAGATCCGCGGCCTGCGGCGTGGCGTGCTACGGCTGGGCCTGCTGCCGGCCTGCAGCAGCGTGCCGTTCACGC
CACTGCTGGCGCTTTATCGCCAGCGCTTTCCCGAGATCGAGGTGCGGCTCGTTGAGCGCGACAGCGCGCAGCTCGAGGAC
GACCTGCGCACCGGCGACATCGACATCGCCGGCAGCCTGCTTCCGATCTCGCCGGAATTCGATTTCGAGCCGCTGTGCCG
CGAGCCGCTGGTGGCCGTACTGCCGTCGGGCCATCCGCTGGCGACGCAAGCCGAGATCCGGCTCGCCGACCTCAGGGATA
CGCCGTTCATCATGCTGGAGAGCGGCCTTGCGCTGCATCGGATCGTGCTCGACGCCAGCCGCCGCGCGGGATTTTTGCCC
GCCATCGCGGCGCGCAGCAGCCAGATCGACTTCACCATGGAACTGGCGGCGGCAGGGCTGGGCGTCGCCTTCCTGCCGCG
CATGATCGCGGCACAGAGGCACGACGCCGCGGTCTGTCAGGTGAGGCTCGCCGAGCCGGACCTGGAATGGAGCATGGCGA
TGGCCTGGCGCCGTGGCGCCTATCTGTCCGACGCCGCCAGCGCGTGGCTTGCCCTCGTCCGCGAACGCCATGGCGAGGCG
TGA

Upstream 100 bases:

>100_bases
GGGCTATGCCACCGGCTACGCGGTCTCCCGCCTGGTGATGGCGCTTTTGACCATCGTGGTGGTCAACGCCTTCTGAACGT
CGCCCACCGACCAATCCTTG

Downstream 100 bases:

>100_bases
GCCAGCTGGAACCGGCGATGCGAACGCCCTCGAACGAGGTTGGGGGCTCGCCTTCAGAGCGCGGGTACCGGCTGGGGTTC
GGCCCCTTCCACCTGCAGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MPPSLGEGGIRAVRDCSLLQYDTGLAMEFRPLRSFVEVVRQGGFSQAAKAVLTSQSAVSKAVKQLEAEVGVPLLDRMGHR
SVLTPAGEVVYRRAVKLLADRADLLAELDEIRGLRRGVLRLGLLPACSSVPFTPLLALYRQRFPEIEVRLVERDSAQLED
DLRTGDIDIAGSLLPISPEFDFEPLCREPLVAVLPSGHPLATQAEIRLADLRDTPFIMLESGLALHRIVLDASRRAGFLP
AIAARSSQIDFTMELAAAGLGVAFLPRMIAAQRHDAAVCQVRLAEPDLEWSMAMAWRRGAYLSDAASAWLALVRERHGEA

Sequences:

>Translated_320_residues
MPPSLGEGGIRAVRDCSLLQYDTGLAMEFRPLRSFVEVVRQGGFSQAAKAVLTSQSAVSKAVKQLEAEVGVPLLDRMGHR
SVLTPAGEVVYRRAVKLLADRADLLAELDEIRGLRRGVLRLGLLPACSSVPFTPLLALYRQRFPEIEVRLVERDSAQLED
DLRTGDIDIAGSLLPISPEFDFEPLCREPLVAVLPSGHPLATQAEIRLADLRDTPFIMLESGLALHRIVLDASRRAGFLP
AIAARSSQIDFTMELAAAGLGVAFLPRMIAAQRHDAAVCQVRLAEPDLEWSMAMAWRRGAYLSDAASAWLALVRERHGEA
>Mature_319_residues
PPSLGEGGIRAVRDCSLLQYDTGLAMEFRPLRSFVEVVRQGGFSQAAKAVLTSQSAVSKAVKQLEAEVGVPLLDRMGHRS
VLTPAGEVVYRRAVKLLADRADLLAELDEIRGLRRGVLRLGLLPACSSVPFTPLLALYRQRFPEIEVRLVERDSAQLEDD
LRTGDIDIAGSLLPISPEFDFEPLCREPLVAVLPSGHPLATQAEIRLADLRDTPFIMLESGLALHRIVLDASRRAGFLPA
IAARSSQIDFTMELAAAGLGVAFLPRMIAAQRHDAAVCQVRLAEPDLEWSMAMAWRRGAYLSDAASAWLALVRERHGEA

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=291, Percent_Identity=31.2714776632302, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1788887, Length=298, Percent_Identity=33.5570469798658, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787879, Length=294, Percent_Identity=28.9115646258503, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790399, Length=293, Percent_Identity=26.2798634812287, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI145693105, Length=295, Percent_Identity=23.3898305084746, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787530, Length=280, Percent_Identity=24.2857142857143, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=25.5144032921811, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787806, Length=278, Percent_Identity=27.6978417266187, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786401, Length=121, Percent_Identity=38.0165289256198, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787601, Length=178, Percent_Identity=26.9662921348315, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788481, Length=297, Percent_Identity=26.5993265993266, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788748, Length=294, Percent_Identity=25.8503401360544, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1790208, Length=248, Percent_Identity=28.2258064516129, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788297, Length=145, Percent_Identity=31.7241379310345, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87081904, Length=202, Percent_Identity=28.2178217821782, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI2367136, Length=247, Percent_Identity=22.2672064777328, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87081978, Length=165, Percent_Identity=32.1212121212121, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789506, Length=288, Percent_Identity=21.875, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790262, Length=256, Percent_Identity=25, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34964; Mature: 34833

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPSLGEGGIRAVRDCSLLQYDTGLAMEFRPLRSFVEVVRQGGFSQAAKAVLTSQSAVSK
CCCCCCCCCHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
AVKQLEAEVGVPLLDRMGHRSVLTPAGEVVYRRAVKLLADRADLLAELDEIRGLRRGVLR
HHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLLPACSSVPFTPLLALYRQRFPEIEVRLVERDSAQLEDDLRTGDIDIAGSLLPISPEF
HHCHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCEEECCCEEECCCCC
DFEPLCREPLVAVLPSGHPLATQAEIRLADLRDTPFIMLESGLALHRIVLDASRRAGFLP
CCCHHCCCCCEEECCCCCCCCCCCCEEEECCCCCCEEEECCCCHHHHHHHHHHHCCCCCH
AIAARSSQIDFTMELAAAGLGVAFLPRMIAAQRHDAAVCQVRLAEPDLEWSMAMAWRRGA
HHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCHHEEEEEECCCCCHHHHHHHHHCCC
YLSDAASAWLALVRERHGEA
CHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PPSLGEGGIRAVRDCSLLQYDTGLAMEFRPLRSFVEVVRQGGFSQAAKAVLTSQSAVSK
CCCCCCCCHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
AVKQLEAEVGVPLLDRMGHRSVLTPAGEVVYRRAVKLLADRADLLAELDEIRGLRRGVLR
HHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLLPACSSVPFTPLLALYRQRFPEIEVRLVERDSAQLEDDLRTGDIDIAGSLLPISPEF
HHCHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCEEECCCEEECCCCC
DFEPLCREPLVAVLPSGHPLATQAEIRLADLRDTPFIMLESGLALHRIVLDASRRAGFLP
CCCHHCCCCCEEECCCCCCCCCCCCEEEECCCCCCEEEECCCCHHHHHHHHHHHCCCCCH
AIAARSSQIDFTMELAAAGLGVAFLPRMIAAQRHDAAVCQVRLAEPDLEWSMAMAWRRGA
HHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCHHEEEEEECCCCCHHHHHHHHHCCC
YLSDAASAWLALVRERHGEA
CHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]