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The map label for this gene is rplU [H]

Identifier: 154247750

GI number: 154247750

Start: 4246731

End: 4247492

Strand: Direct

Name: rplU [H]

Synonym: Xaut_3827

Alternate gene names: 154247750

Gene position: 4246731-4247492 (Clockwise)

Preceding gene: 154247749

Following gene: 154247752

Centisome position: 79.99

GC content: 75.07

Gene sequence:

>762_bases
ATGACGGCCTTCACCATCGAAGTCCTGCTGCTTCTGGCCCTGGCCTTCCTGCTGGGGCTGGCCGTGGGCTTCAAGCTCGG
CCGCCGCGCCGTCCCTACGGCCGAAAGCGGGGCACCGCCCGTGGCCACGTTCACCGGCCGGCTGCCGGTGCACGAGGCAG
GCGAGAACGAGGCGGGTGAGTACGGGGCAGGTGGGCGCCTGCCGCCGTCAGCGCTGCCCTTCTCCGCCACACCCTCCGAT
CCCGGACCCCATGATAGCGCCCATGACACCGCGCCGGACCCTGTGGCTCCGCGTGCGCCGCTTCAAGGCGAGCCGCTTCC
CCTGCCGCCCCGTCCGGCGCCGGCGCCGCGGGAGCCGGACCTGTTCTCCCGGCTCGGGCTGAGCCCGAACCTCGCCTCCC
TGCCGCCGGAACCGGAGGACGAGCCCCTGCCGTTGCCGCTGCCCCCGCCGCCGGTGGTGCGGGAGAAGGGGCCGGACGGC
CATCCGGGCGTGCGCCCGCCCACCCTCGATGCGCCGGAGGGGGAGGGGGCGGACGACCTCAAGCTGCTGAAGGGCATCGG
CCCGCAGAACGAGCGCCGGCTCAACGCGCTCGGCATCTTCCATATCCGCCAGATCGCCGCCTGGACCCCGGACGAGGCGG
CCTGGGTGGGCAGCTACCTGGCCTTTCCCGGCCGCATCGAACGGGAGAACTGGATCGGCCAGGCCCGTGCCCTCGCCGCC
GGCGCGCCGCCGCCGGAGCCGGGCAGCCGCCGGCGAGGGTGA

Upstream 100 bases:

>100_bases
TCTATCTCACCCTCGCCTTGTGGCCTTATCTTCTGGGGGCGGTGGGAATCGGCCTTGCCACCGGCTATGCGCTCGGCCGG
CTGAACCCGGGGAGGCGTGC

Downstream 100 bases:

>100_bases
GGCGGGTCGCGGCTTCAGGGGGGAGAGGATTGCCATCATCCCGCACCACGGGTGAACCCTCTCCCGCGTGCGGGGAGGGC
AGGGTAGGGGCAGCGCCATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MTAFTIEVLLLLALAFLLGLAVGFKLGRRAVPTAESGAPPVATFTGRLPVHEAGENEAGEYGAGGRLPPSALPFSATPSD
PGPHDSAHDTAPDPVAPRAPLQGEPLPLPPRPAPAPREPDLFSRLGLSPNLASLPPEPEDEPLPLPLPPPPVVREKGPDG
HPGVRPPTLDAPEGEGADDLKLLKGIGPQNERRLNALGIFHIRQIAAWTPDEAAWVGSYLAFPGRIERENWIGQARALAA
GAPPPEPGSRRRG

Sequences:

>Translated_253_residues
MTAFTIEVLLLLALAFLLGLAVGFKLGRRAVPTAESGAPPVATFTGRLPVHEAGENEAGEYGAGGRLPPSALPFSATPSD
PGPHDSAHDTAPDPVAPRAPLQGEPLPLPPRPAPAPREPDLFSRLGLSPNLASLPPEPEDEPLPLPLPPPPVVREKGPDG
HPGVRPPTLDAPEGEGADDLKLLKGIGPQNERRLNALGIFHIRQIAAWTPDEAAWVGSYLAFPGRIERENWIGQARALAA
GAPPPEPGSRRRG
>Mature_252_residues
TAFTIEVLLLLALAFLLGLAVGFKLGRRAVPTAESGAPPVATFTGRLPVHEAGENEAGEYGAGGRLPPSALPFSATPSDP
GPHDSAHDTAPDPVAPRAPLQGEPLPLPPRPAPAPREPDLFSRLGLSPNLASLPPEPEDEPLPLPLPPPPVVREKGPDGH
PGVRPPTLDAPEGEGADDLKLLKGIGPQNERRLNALGIFHIRQIAAWTPDEAAWVGSYLAFPGRIERENWIGQARALAAG
APPPEPGSRRRG

Specific function: This protein binds to 23S rRNA in the presence of protein L20 [H]

COG id: COG3743

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001787 [H]

Pfam domain/function: PF00829 Ribosomal_L21p [H]

EC number: NA

Molecular weight: Translated: 26508; Mature: 26377

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAFTIEVLLLLALAFLLGLAVGFKLGRRAVPTAESGAPPVATFTGRLPVHEAGENEAGE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
YGAGGRLPPSALPFSATPSDPGPHDSAHDTAPDPVAPRAPLQGEPLPLPPRPAPAPREPD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
LFSRLGLSPNLASLPPEPEDEPLPLPLPPPPVVREKGPDGHPGVRPPTLDAPEGEGADDL
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
KLLKGIGPQNERRLNALGIFHIRQIAAWTPDEAAWVGSYLAFPGRIERENWIGQARALAA
HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
GAPPPEPGSRRRG
CCCCCCCCCCCCC
>Mature Secondary Structure 
TAFTIEVLLLLALAFLLGLAVGFKLGRRAVPTAESGAPPVATFTGRLPVHEAGENEAGE
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
YGAGGRLPPSALPFSATPSDPGPHDSAHDTAPDPVAPRAPLQGEPLPLPPRPAPAPREPD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
LFSRLGLSPNLASLPPEPEDEPLPLPLPPPPVVREKGPDGHPGVRPPTLDAPEGEGADDL
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
KLLKGIGPQNERRLNALGIFHIRQIAAWTPDEAAWVGSYLAFPGRIERENWIGQARALAA
HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
GAPPPEPGSRRRG
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA