Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
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Accession | NC_009720 |
Length | 5,308,934 |
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The map label for this gene is 154247630
Identifier: 154247630
GI number: 154247630
Start: 4109349
End: 4110782
Strand: Direct
Name: 154247630
Synonym: Xaut_3705
Alternate gene names: NA
Gene position: 4109349-4110782 (Clockwise)
Preceding gene: 154247629
Following gene: 154247631
Centisome position: 77.4
GC content: 68.83
Gene sequence:
>1434_bases ATGGCATCCTGGTGGCCCTTCGGCCGGCGTTCGCAAACCAAGGCGAGCGCCGCCGGCTCGGTGATTTCGGCGTGGAATGT CGGCCAGCCCGTCTGGACTGATCGCCGCTACGACCGGATCGCCGATGAGGCCTATGTCAGGAACGCGGTCGCGCACCGCT GCGTGAAGATGATCGCCTCCGCCGCCGCGACGATCCCCTGGCTCCTGGCGGACACCAAGGGGCGGGAGGTGGAGGAAAGC CCCCTTCTCGACCTGCTCAGGCGCCCGGCGCCCGGCATCGGCGGGCATTCGCTGTTCGAGGCGTTCTACGCCTACCTGCT GCTCGCCGGGAACACCTACCTCGAGGCGGTCGCTCCCGCCGACGGCAAACCGCCGCGCGAGCTTTGGACGCTCCGCCCTG ATCGGACACGGGTGATCCCCGGCGCCTATGGCCGCCCGGAGGCCTACGAATACGAGGCCAACGGCCAGAAGATGACGTGG CAGGTGGACCCGCTGACCGGAGAGGGCCCGATCCTGCATCTGAAGGAGTTCCACCCGATCAACGACTGGTATGGCCTGTC GCGGGTGGACCCGGCCGCCTATGCGGTGGACCGCCATAACGCCGCGAGCGCCCACAACATGGCGCTCCTGCAGAACGGCG CCCGGCCGAGCGGTGCGCTGATCTTCAAGCCGGTGGTGGTGAACGGCTCGGCACAGTCCGCGCCCAAGGAGGCGGTGGAG GCGGCCGAGGCGAGGCTGAAGGAGCGACATGGCGGCTTCGAGAACGCCGGCCGGCCCATGGTGCTGGGCGGGAACGTAGA CTGGCAGGAAATGGGGATCACGCCCAAGGACATGGACTTCGGCGCCGGCAAGGACGATGCGGCGCGGGACATCTGCACCG CCTTTGGGGTGCCCCACATCCTGATCGTGCCGGGGGCGAGCACCTACAACAACGTCCGCGAGGCAACTTTGGGCCTCTAC GAGGACACGGTCCTGCCCCTGGTGGACAAGGCCGTGGACGCGCTCGATGCCTGGCTCACCCCGCGGTTCGACGACCGCCT GCGTCTCGGCGTGGACCTCGACGAGGTGCCGGCGCTGGAGCCTCGGCGAGAGTCGAAGCGGAAGGCGACAATCGAACTGT TTGAGAAGCGCCTCATCACCCGCGACGAGGCGCGGGACGCGCTGCAATACGAGCCGCTCCCAGACGCCACGCAGTTCGAC CCCGACGCGCAAGTGCTCTCTGCCCTCGTTGACGCCTACACGAAGGACGCGCTGCCGATCGAGATGCTCTGGCGCTATGC CAGATCCATCGGCCTGAGCGTCCAGACGGACGAGGAGCTTCTCGCCGCCCTCACGGCTGAGCGCGATCTGCGCGCCGCCG AGGAAGCCGGCGCGTCCTTGGGCGACACCGGGCAACCGGCGGCCGATACCCAGGCCGATCCGGCCGCTCCCTGA
Upstream 100 bases:
>100_bases GTTCGCCGGATCGAGCTGATGCGGCGGTGTGGGCGCTCACCGAATTGATGCTCGGGCCGTCCCCCTTCACCTGGTTCGTC GGAAACTGAAGGGCCACTAC
Downstream 100 bases:
>100_bases TGGCGAAGCCGACCAAGAAGTACCTGCTCGAGCTGGTGGCGCAGCACGGGCCCGAGATCGCAAAGGCGTTCAAGGCATCC ATCACGTCGATCAAGGGCTC
Product: HK97 family phage portal protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 477; Mature: 476
Protein sequence:
>477_residues MASWWPFGRRSQTKASAAGSVISAWNVGQPVWTDRRYDRIADEAYVRNAVAHRCVKMIASAAATIPWLLADTKGREVEES PLLDLLRRPAPGIGGHSLFEAFYAYLLLAGNTYLEAVAPADGKPPRELWTLRPDRTRVIPGAYGRPEAYEYEANGQKMTW QVDPLTGEGPILHLKEFHPINDWYGLSRVDPAAYAVDRHNAASAHNMALLQNGARPSGALIFKPVVVNGSAQSAPKEAVE AAEARLKERHGGFENAGRPMVLGGNVDWQEMGITPKDMDFGAGKDDAARDICTAFGVPHILIVPGASTYNNVREATLGLY EDTVLPLVDKAVDALDAWLTPRFDDRLRLGVDLDEVPALEPRRESKRKATIELFEKRLITRDEARDALQYEPLPDATQFD PDAQVLSALVDAYTKDALPIEMLWRYARSIGLSVQTDEELLAALTAERDLRAAEEAGASLGDTGQPAADTQADPAAP
Sequences:
>Translated_477_residues MASWWPFGRRSQTKASAAGSVISAWNVGQPVWTDRRYDRIADEAYVRNAVAHRCVKMIASAAATIPWLLADTKGREVEES PLLDLLRRPAPGIGGHSLFEAFYAYLLLAGNTYLEAVAPADGKPPRELWTLRPDRTRVIPGAYGRPEAYEYEANGQKMTW QVDPLTGEGPILHLKEFHPINDWYGLSRVDPAAYAVDRHNAASAHNMALLQNGARPSGALIFKPVVVNGSAQSAPKEAVE AAEARLKERHGGFENAGRPMVLGGNVDWQEMGITPKDMDFGAGKDDAARDICTAFGVPHILIVPGASTYNNVREATLGLY EDTVLPLVDKAVDALDAWLTPRFDDRLRLGVDLDEVPALEPRRESKRKATIELFEKRLITRDEARDALQYEPLPDATQFD PDAQVLSALVDAYTKDALPIEMLWRYARSIGLSVQTDEELLAALTAERDLRAAEEAGASLGDTGQPAADTQADPAAP >Mature_476_residues ASWWPFGRRSQTKASAAGSVISAWNVGQPVWTDRRYDRIADEAYVRNAVAHRCVKMIASAAATIPWLLADTKGREVEESP LLDLLRRPAPGIGGHSLFEAFYAYLLLAGNTYLEAVAPADGKPPRELWTLRPDRTRVIPGAYGRPEAYEYEANGQKMTWQ VDPLTGEGPILHLKEFHPINDWYGLSRVDPAAYAVDRHNAASAHNMALLQNGARPSGALIFKPVVVNGSAQSAPKEAVEA AEARLKERHGGFENAGRPMVLGGNVDWQEMGITPKDMDFGAGKDDAARDICTAFGVPHILIVPGASTYNNVREATLGLYE DTVLPLVDKAVDALDAWLTPRFDDRLRLGVDLDEVPALEPRRESKRKATIELFEKRLITRDEARDALQYEPLPDATQFDP DAQVLSALVDAYTKDALPIEMLWRYARSIGLSVQTDEELLAALTAERDLRAAEEAGASLGDTGQPAADTQADPAAP
Specific function: Unknown
COG id: COG4695
COG function: function code S; Phage-related protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phage portal family. HK97 subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006944 - InterPro: IPR006427 [H]
Pfam domain/function: PF04860 Phage_portal [H]
EC number: NA
Molecular weight: Translated: 52213; Mature: 52082
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASWWPFGRRSQTKASAAGSVISAWNVGQPVWTDRRYDRIADEAYVRNAVAHRCVKMIAS CCCCCCCCCCCCCHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AAATIPWLLADTKGREVEESPLLDLLRRPAPGIGGHSLFEAFYAYLLLAGNTYLEAVAPA HHHHCCEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHEEEECCC DGKPPRELWTLRPDRTRVIPGAYGRPEAYEYEANGQKMTWQVDPLTGEGPILHLKEFHPI CCCCHHHHCCCCCCCCEECCCCCCCCCCEEEECCCCEEEEEECCCCCCCCEEEECCCCCC NDWYGLSRVDPAAYAVDRHNAASAHNMALLQNGARPSGALIFKPVVVNGSAQSAPKEAVE HHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCHHHHHH AAEARLKERHGGFENAGRPMVLGGNVDWQEMGITPKDMDFGAGKDDAARDICTAFGVPHI HHHHHHHHHCCCCCCCCCCEEECCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEE LIVPGASTYNNVREATLGLYEDTVLPLVDKAVDALDAWLTPRFDDRLRLGVDLDEVPALE EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHCCCCC PRRESKRKATIELFEKRLITRDEARDALQYEPLPDATQFDPDAQVLSALVDAYTKDALPI CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCH EMLWRYARSIGLSVQTDEELLAALTAERDLRAAEEAGASLGDTGQPAADTQADPAAP HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ASWWPFGRRSQTKASAAGSVISAWNVGQPVWTDRRYDRIADEAYVRNAVAHRCVKMIAS CCCCCCCCCCCCHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AAATIPWLLADTKGREVEESPLLDLLRRPAPGIGGHSLFEAFYAYLLLAGNTYLEAVAPA HHHHCCEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHEEEECCC DGKPPRELWTLRPDRTRVIPGAYGRPEAYEYEANGQKMTWQVDPLTGEGPILHLKEFHPI CCCCHHHHCCCCCCCCEECCCCCCCCCCEEEECCCCEEEEEECCCCCCCCEEEECCCCCC NDWYGLSRVDPAAYAVDRHNAASAHNMALLQNGARPSGALIFKPVVVNGSAQSAPKEAVE HHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCHHHHHH AAEARLKERHGGFENAGRPMVLGGNVDWQEMGITPKDMDFGAGKDDAARDICTAFGVPHI HHHHHHHHHCCCCCCCCCCEEECCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEE LIVPGASTYNNVREATLGLYEDTVLPLVDKAVDALDAWLTPRFDDRLRLGVDLDEVPALE EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHCCCCC PRRESKRKATIELFEKRLITRDEARDALQYEPLPDATQFDPDAQVLSALVDAYTKDALPI CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCH EMLWRYARSIGLSVQTDEELLAALTAERDLRAAEEAGASLGDTGQPAADTQADPAAP HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA