Click here to switch to the map view.

The map label for this gene is erfK [H]

Identifier: 154246768

GI number: 154246768

Start: 3152444

End: 3153703

Strand: Reverse

Name: erfK [H]

Synonym: Xaut_2829

Alternate gene names: 154246768

Gene position: 3153703-3152444 (Counterclockwise)

Preceding gene: 154246772

Following gene: 154246767

Centisome position: 59.4

GC content: 72.54

Gene sequence:

>1260_bases
ATGACCCTGCGCCACAAACTTCTCCTCGCCGCCTTCGGGGCATCGGTTCTCACCGCGCCGGCCTTCGGCCAGCCCGCCAA
CGGCACGAGCTACAGCCTGCCCGCCAACGGGGCGGACGAAGAGGACGCCGGCACGCTGCCGCCCGGCTCCGTGGGGGGCT
ATGGCGCGCCGCCGCCCGGCTATTCTGATCCCTATGCCCGCCAGGCGCCCGTGCGTCACGACCAGTTGGAGCGCACCGAG
CTGCCGCCCCCCGGCCAGCAGTCGGCCCCGGCCTATGGCGCGCCCGCAGCGCAGCCTTATCCGCAGCAGGCCTACCCGCA
GCAGGGCTATCCGCAGCCCGTGCAGCCGAACTATTCCGCCGCGCCGAGCGCCGTCGCCCCCCAGGGCGGCCCGCAGCCGG
CCGCGGTCGTGCCCCAGGGCCAGGCTTACGGAAACCAGCCCTACGGCAACCAGGGCTACAGCCAGCAGACCTATGCCGCG
CCCCAGGCCGGCGCGCCGCCGGCCGGTGTCTATGGCCAGCCGGCCCCCGCTGCCTATGAGCCTCCGGCGCAGGCCACCTA
TGGCGGCTCCGGCCGTGGCGCGGTGGACCAGGACGCGATTTACGCCAGCATCAATGCCGGCCCGCCGCCCGCCGGCGCCT
ATGCGCCCAACGCCGCCGTGGTGCCCGGCACCACCGAGGCGCCGTCTGGCCCGCGCATCGAGAACGTGGACCCCACCGAG
CCGGTGCCGGAGCGTTTCCGCCGCCAGACCGTGGACTATGTGACCACCCAGCCGGCCGGCACCATCATCATCGATACGCC
CAACACCTACCTCTATTACGTGGTGGGCGGCGGCAAGGCGATCCGCTACGGCATCGGCGTGGGCCGCGAGGGCTTTACCT
GGTCCGGCACCCAGAAGATCTCCCGCAAGGCGGAATGGCCCGACTGGCGTCCCCCGTCCGAGATGATCCAGCGCCAGCCC
TACCTGCCGCGCTTCATGGCCGGCGGCCCGGGCAACCCCATGGGCGCCCGCGCGCTCTATCTGGGCAGCACCGAATACCG
CATCCACGGCACCAACGAGCCCCAGACCATCGGCAAGTTCGTGTCGTCCGGCTGCTTCCGCCTGCTGAACGCCGACATCG
AGGACCTGTTCGACCGCGCCGGCGTGGGCACCAAGGTGGTGATCCTGCCGAAGACCGGCACGCCGCAGGCCAATGCCGGC
GCCCCTGCCCCGGTCTCCACCGCGTCCGCCGGCAAGCCCGTGGTTCCGGCCCAGCGCTGA

Upstream 100 bases:

>100_bases
GGGAGCGCCCGGCTCTTCCGTACGGTATTACCGACGTGGCCTGCGAAATTTTCCGCGCCCCGTTTCCAATTTCGTCACGT
TTCACGGTTAACCCTCTCAC

Downstream 100 bases:

>100_bases
TCCTTCAAGCCCGGTCGGCGCCCTGCGCCGGCCGGGTTTTCCCGTCTTCCAGCCTGCCTTCGCTCGCTCGCCACACGCCC
GGGCATGCCCCGTTTGGAAT

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MTLRHKLLLAAFGASVLTAPAFGQPANGTSYSLPANGADEEDAGTLPPGSVGGYGAPPPGYSDPYARQAPVRHDQLERTE
LPPPGQQSAPAYGAPAAQPYPQQAYPQQGYPQPVQPNYSAAPSAVAPQGGPQPAAVVPQGQAYGNQPYGNQGYSQQTYAA
PQAGAPPAGVYGQPAPAAYEPPAQATYGGSGRGAVDQDAIYASINAGPPPAGAYAPNAAVVPGTTEAPSGPRIENVDPTE
PVPERFRRQTVDYVTTQPAGTIIIDTPNTYLYYVVGGGKAIRYGIGVGREGFTWSGTQKISRKAEWPDWRPPSEMIQRQP
YLPRFMAGGPGNPMGARALYLGSTEYRIHGTNEPQTIGKFVSSGCFRLLNADIEDLFDRAGVGTKVVILPKTGTPQANAG
APAPVSTASAGKPVVPAQR

Sequences:

>Translated_419_residues
MTLRHKLLLAAFGASVLTAPAFGQPANGTSYSLPANGADEEDAGTLPPGSVGGYGAPPPGYSDPYARQAPVRHDQLERTE
LPPPGQQSAPAYGAPAAQPYPQQAYPQQGYPQPVQPNYSAAPSAVAPQGGPQPAAVVPQGQAYGNQPYGNQGYSQQTYAA
PQAGAPPAGVYGQPAPAAYEPPAQATYGGSGRGAVDQDAIYASINAGPPPAGAYAPNAAVVPGTTEAPSGPRIENVDPTE
PVPERFRRQTVDYVTTQPAGTIIIDTPNTYLYYVVGGGKAIRYGIGVGREGFTWSGTQKISRKAEWPDWRPPSEMIQRQP
YLPRFMAGGPGNPMGARALYLGSTEYRIHGTNEPQTIGKFVSSGCFRLLNADIEDLFDRAGVGTKVVILPKTGTPQANAG
APAPVSTASAGKPVVPAQR
>Mature_418_residues
TLRHKLLLAAFGASVLTAPAFGQPANGTSYSLPANGADEEDAGTLPPGSVGGYGAPPPGYSDPYARQAPVRHDQLERTEL
PPPGQQSAPAYGAPAAQPYPQQAYPQQGYPQPVQPNYSAAPSAVAPQGGPQPAAVVPQGQAYGNQPYGNQGYSQQTYAAP
QAGAPPAGVYGQPAPAAYEPPAQATYGGSGRGAVDQDAIYASINAGPPPAGAYAPNAAVVPGTTEAPSGPRIENVDPTEP
VPERFRRQTVDYVTTQPAGTIIIDTPNTYLYYVVGGGKAIRYGIGVGREGFTWSGTQKISRKAEWPDWRPPSEMIQRQPY
LPRFMAGGPGNPMGARALYLGSTEYRIHGTNEPQTIGKFVSSGCFRLLNADIEDLFDRAGVGTKVVILPKTGTPQANAGA
PAPVSTASAGKPVVPAQR

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=137, Percent_Identity=40.1459854014599, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787040, Length=136, Percent_Identity=41.1764705882353, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787968, Length=136, Percent_Identity=36.7647058823529, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787356, Length=138, Percent_Identity=36.231884057971, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 43516; Mature: 43384

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRHKLLLAAFGASVLTAPAFGQPANGTSYSLPANGADEEDAGTLPPGSVGGYGAPPPG
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
YSDPYARQAPVRHDQLERTELPPPGQQSAPAYGAPAAQPYPQQAYPQQGYPQPVQPNYSA
CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APSAVAPQGGPQPAAVVPQGQAYGNQPYGNQGYSQQTYAAPQAGAPPAGVYGQPAPAAYE
CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PPAQATYGGSGRGAVDQDAIYASINAGPPPAGAYAPNAAVVPGTTEAPSGPRIENVDPTE
CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
PVPERFRRQTVDYVTTQPAGTIIIDTPNTYLYYVVGGGKAIRYGIGVGREGFTWSGTQKI
HHHHHHHHHHHHHEEECCCCEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCHHHH
SRKAEWPDWRPPSEMIQRQPYLPRFMAGGPGNPMGARALYLGSTEYRIHGTNEPQTIGKF
HHCCCCCCCCCHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCEEEEECCCCHHHHHHH
VSSGCFRLLNADIEDLFDRAGVGTKVVILPKTGTPQANAGAPAPVSTASAGKPVVPAQR
HHHHHHHHHCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLRHKLLLAAFGASVLTAPAFGQPANGTSYSLPANGADEEDAGTLPPGSVGGYGAPPPG
CHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
YSDPYARQAPVRHDQLERTELPPPGQQSAPAYGAPAAQPYPQQAYPQQGYPQPVQPNYSA
CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APSAVAPQGGPQPAAVVPQGQAYGNQPYGNQGYSQQTYAAPQAGAPPAGVYGQPAPAAYE
CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PPAQATYGGSGRGAVDQDAIYASINAGPPPAGAYAPNAAVVPGTTEAPSGPRIENVDPTE
CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
PVPERFRRQTVDYVTTQPAGTIIIDTPNTYLYYVVGGGKAIRYGIGVGREGFTWSGTQKI
HHHHHHHHHHHHHEEECCCCEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCHHHH
SRKAEWPDWRPPSEMIQRQPYLPRFMAGGPGNPMGARALYLGSTEYRIHGTNEPQTIGKF
HHCCCCCCCCCHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCEEEEECCCCHHHHHHH
VSSGCFRLLNADIEDLFDRAGVGTKVVILPKTGTPQANAGAPAPVSTASAGKPVVPAQR
HHHHHHHHHCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7592411; 9097040; 9278503; 9298646 [H]