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The map label for this gene is yckA [H]

Identifier: 154246381

GI number: 154246381

Start: 2726584

End: 2727243

Strand: Direct

Name: yckA [H]

Synonym: Xaut_2440

Alternate gene names: 154246381

Gene position: 2726584-2727243 (Clockwise)

Preceding gene: 154246380

Following gene: 154246382

Centisome position: 51.36

GC content: 63.64

Gene sequence:

>660_bases
ATGTTCCTGCGCAGCTTCGGCCTCAATGAATTCTACTTCCTGCTCGAAAGCCTCCAGTGGACGCTGGCCCTCACGGGGCT
GGCCATGGTGGGCGGCGGCATCGCCGGCTTCCTGGTGGCGCTCATGCGCACCGCCCGCACCAGCGCTTTGCGCATCGCCG
CTGGCGTCTACATCCAGGTGGTCCAGGGCATCCCGGTGCTGATGATCCTGTTCCTCAGCTATTACGGCCTCAGCCTTGCG
GGATACCAACTGCCGGCCATCGTGGCCGCCGGCCTGTCCATGTCCATCTATGCCTCGGGCTATCTGGGCGAGATCTGGCG
CGGCTGCATCCAGGCGGTGCCGAAACCCCAGTGGGAGAGCGGCGAAAGCCTCGCCCTCACCATCCCGCAGCAGTATCTCT
ACATCATCCTGCCGCAGGCGATCCGCATTTCCCTGCCGCCCACCGTGGGCTTCCTGGTTCAATTGGTGAAGAACACTTCC
ATCGCCGCCCTGATCGGCTTCGTGGAACTGACGCGGGCCGGCCAGCTCATCAACAACGCCACCTTCCAGCCGTTCCGGGT
GTTCCTGACGGTGGCCGCGCTCTACTTCGTCATCTGCTACCCCATGTCCCAGCTCTCGCGCTGGCTGGAAAGGAGGCTCC
ATGTCGGAAGTCGTCATTGA

Upstream 100 bases:

>100_bases
CGCTGACCTTGCGCGGCGCGCTCGCGCTCATCGGCTGGCGCCTGTTCGGGCGACCCGGCGGGCGCGCCGTACAGCCCACC
CTCAAGGTGGAGGCGGTGTG

Downstream 100 bases:

>100_bases
CCAGGTCCACAAGAGCTTCGGCGCGGTGGAAGTCCTGAAGGGGGTCTCGCTCTCCGTCGCCCCCGGCGAGGTCACGGCGC
TCATCGGCCGCTCGGGCTCG

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MFLRSFGLNEFYFLLESLQWTLALTGLAMVGGGIAGFLVALMRTARTSALRIAAGVYIQVVQGIPVLMILFLSYYGLSLA
GYQLPAIVAAGLSMSIYASGYLGEIWRGCIQAVPKPQWESGESLALTIPQQYLYIILPQAIRISLPPTVGFLVQLVKNTS
IAALIGFVELTRAGQLINNATFQPFRVFLTVAALYFVICYPMSQLSRWLERRLHVGSRH

Sequences:

>Translated_219_residues
MFLRSFGLNEFYFLLESLQWTLALTGLAMVGGGIAGFLVALMRTARTSALRIAAGVYIQVVQGIPVLMILFLSYYGLSLA
GYQLPAIVAAGLSMSIYASGYLGEIWRGCIQAVPKPQWESGESLALTIPQQYLYIILPQAIRISLPPTVGFLVQLVKNTS
IAALIGFVELTRAGQLINNATFQPFRVFLTVAALYFVICYPMSQLSRWLERRLHVGSRH
>Mature_219_residues
MFLRSFGLNEFYFLLESLQWTLALTGLAMVGGGIAGFLVALMRTARTSALRIAAGVYIQVVQGIPVLMILFLSYYGLSLA
GYQLPAIVAAGLSMSIYASGYLGEIWRGCIQAVPKPQWESGESLALTIPQQYLYIILPQAIRISLPPTVGFLVQLVKNTS
IAALIGFVELTRAGQLINNATFQPFRVFLTVAALYFVICYPMSQLSRWLERRLHVGSRH

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=212, Percent_Identity=34.9056603773585, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI87082239, Length=216, Percent_Identity=30.5555555555556, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1787030, Length=204, Percent_Identity=31.8627450980392, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788645, Length=202, Percent_Identity=28.7128712871287, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI48994930, Length=137, Percent_Identity=34.3065693430657, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788646, Length=174, Percent_Identity=25.8620689655172, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787087, Length=232, Percent_Identity=22.4137931034483, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786874, Length=175, Percent_Identity=27.4285714285714, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786873, Length=208, Percent_Identity=27.8846153846154, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787086, Length=211, Percent_Identity=27.4881516587678, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24155; Mature: 24155

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLRSFGLNEFYFLLESLQWTLALTGLAMVGGGIAGFLVALMRTARTSALRIAAGVYIQV
CCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQGIPVLMILFLSYYGLSLAGYQLPAIVAAGLSMSIYASGYLGEIWRGCIQAVPKPQWES
HCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHEEHHCCCHHHHHHHHHHHCCCCCCCC
GESLALTIPQQYLYIILPQAIRISLPPTVGFLVQLVKNTSIAALIGFVELTRAGQLINNA
CCEEEEEECHHHHHHEECHHHEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
TFQPFRVFLTVAALYFVICYPMSQLSRWLERRLHVGSRH
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MFLRSFGLNEFYFLLESLQWTLALTGLAMVGGGIAGFLVALMRTARTSALRIAAGVYIQV
CCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQGIPVLMILFLSYYGLSLAGYQLPAIVAAGLSMSIYASGYLGEIWRGCIQAVPKPQWES
HCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHEEHHCCCHHHHHHHHHHHCCCCCCCC
GESLALTIPQQYLYIILPQAIRISLPPTVGFLVQLVKNTSIAALIGFVELTRAGQLINNA
CCEEEEEECHHHHHHEECHHHEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
TFQPFRVFLTVAALYFVICYPMSQLSRWLERRLHVGSRH
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]