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The map label for this gene is xylR [H]

Identifier: 154246359

GI number: 154246359

Start: 2699344

End: 2700576

Strand: Reverse

Name: xylR [H]

Synonym: Xaut_2418

Alternate gene names: 154246359

Gene position: 2700576-2699344 (Counterclockwise)

Preceding gene: 154246360

Following gene: 154246358

Centisome position: 50.87

GC content: 71.45

Gene sequence:

>1233_bases
ATGCAGCGCAGTCCCCTGAAGGACGATTCTGGCCCGGTCCACGCCTCGCACGGGCGCGGCACGAACCAGACTGGCGTGCG
CCTCTACAACGAGCGGCTGATCCTCTCCCTCATCCGCCGCCACGGTCGACTGACCAAGGTGGACATCGCCCGCCTCACCG
GCCTGTCGCTGCAGACCACCACGGTGGTCATGAACCGGCTGGAGGCCGACGGCCTGCTGCTCGCGGGCGAGCGCCAGCGC
GGGCGGATCGGCCAGCCGGCGGTGCCCTATTCGCTCAATCCCGACGGCGCCTACGGCCTCGGCATGGTGGTGGGCCGGCG
CGCCTGCGAGCTGGTGCTGATGGATTTCGTCGCGGGCGTGCGCCGGCGCGAGCGCCTGACCTATCCCTATCCCCTGCCCG
ACCAGCTCATCGCCTTCGCCGGCCGCACCCTTCCCGACCTCATCGCGACGCTTTCGCCCGCAGCCCAGGCGCGCATCTGC
GGCACCGGCATCGCCACGCCGTTCGAGCTGTGGAACTGGGAGGAAGTGCTGGAGGCCCCCAAGGATGCCCTTGCCGGGTG
GCACGACTTCGACCTGGGCGCCGAGCTGTCCCGCATCGCCCCCGGTCCGGTGCGGGTCATCAACGACGCCACCGCCGCCT
GCGCCGCAGAGCTGACCTTCGGCGGCGGTTCGGCCTATCGCGACTTCGCCTATTTCTACATCGCCACCTTCATCGGCGGC
GGCATCGTGCTGAACGGCAGCCTGTTTCCCGGCCGCAGCGGCAATGCCGGCGCCTTCGGCTCCATGCCGGTGGTGGCCCG
CGGACCCGGCGGCGGCGCGGGGGTCCAGCAGCTCATCCGCTCGGCCTCCCTCTACCGGCTGGAGCGCCAGCTCGGCGCCA
TCGGCATCGCCGGTTCCCAGTTGTGGGAGCAGCCCGACGACTGGAGCCGCTTTTCCGCCCCCGTGGACGCCTGGATCGAG
GAGGCCGCCGAGGGCCTCGCCCAGGCCATCGCCTCCTGCCTCGCGGTGGTGGATTTCGAGGCCATGGTCATCGACGGCGC
CTTCCCGGCGCCGGTGCGGGACAAGCTGGTGAAACGCACAGCCGCCGCCTTCGCGCGCCTCGACCGGCAGGGCCTGACCG
AGACCCGCATCGTCGCCGGCACCATGGGCCGCGCGGCGCGCGCCATCGGCGGTGCCGCCTTGCCTTTGCTCGACACCTTC
GGCCGCGACCTCGACGTTCTGTTCAAGGACTGA

Upstream 100 bases:

>100_bases
AACAAGACGATCCGTCGCGCACGGGCGCCACCGGGCGGCTCGCAAGGGCGCCGAACCGGCGCGAGGGAATTAGGGTCGAG
GAACTGGGGTCGAGGGTTTC

Downstream 100 bases:

>100_bases
CCATGCTCAAAGGCATCGACCCCTTGCTGGGCCCCGATCTGCTGGCCACCCTGCGCGCCATGGGCCACGGCGACGAGATC
GCCATCGTGGACGCCAATTA

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MQRSPLKDDSGPVHASHGRGTNQTGVRLYNERLILSLIRRHGRLTKVDIARLTGLSLQTTTVVMNRLEADGLLLAGERQR
GRIGQPAVPYSLNPDGAYGLGMVVGRRACELVLMDFVAGVRRRERLTYPYPLPDQLIAFAGRTLPDLIATLSPAAQARIC
GTGIATPFELWNWEEVLEAPKDALAGWHDFDLGAELSRIAPGPVRVINDATAACAAELTFGGGSAYRDFAYFYIATFIGG
GIVLNGSLFPGRSGNAGAFGSMPVVARGPGGGAGVQQLIRSASLYRLERQLGAIGIAGSQLWEQPDDWSRFSAPVDAWIE
EAAEGLAQAIASCLAVVDFEAMVIDGAFPAPVRDKLVKRTAAAFARLDRQGLTETRIVAGTMGRAARAIGGAALPLLDTF
GRDLDVLFKD

Sequences:

>Translated_410_residues
MQRSPLKDDSGPVHASHGRGTNQTGVRLYNERLILSLIRRHGRLTKVDIARLTGLSLQTTTVVMNRLEADGLLLAGERQR
GRIGQPAVPYSLNPDGAYGLGMVVGRRACELVLMDFVAGVRRRERLTYPYPLPDQLIAFAGRTLPDLIATLSPAAQARIC
GTGIATPFELWNWEEVLEAPKDALAGWHDFDLGAELSRIAPGPVRVINDATAACAAELTFGGGSAYRDFAYFYIATFIGG
GIVLNGSLFPGRSGNAGAFGSMPVVARGPGGGAGVQQLIRSASLYRLERQLGAIGIAGSQLWEQPDDWSRFSAPVDAWIE
EAAEGLAQAIASCLAVVDFEAMVIDGAFPAPVRDKLVKRTAAAFARLDRQGLTETRIVAGTMGRAARAIGGAALPLLDTF
GRDLDVLFKD
>Mature_410_residues
MQRSPLKDDSGPVHASHGRGTNQTGVRLYNERLILSLIRRHGRLTKVDIARLTGLSLQTTTVVMNRLEADGLLLAGERQR
GRIGQPAVPYSLNPDGAYGLGMVVGRRACELVLMDFVAGVRRRERLTYPYPLPDQLIAFAGRTLPDLIATLSPAAQARIC
GTGIATPFELWNWEEVLEAPKDALAGWHDFDLGAELSRIAPGPVRVINDATAACAAELTFGGGSAYRDFAYFYIATFIGG
GIVLNGSLFPGRSGNAGAFGSMPVVARGPGGGAGVQQLIRSASLYRLERQLGAIGIAGSQLWEQPDDWSRFSAPVDAWIE
EAAEGLAQAIASCLAVVDFEAMVIDGAFPAPVRDKLVKRTAAAFARLDRQGLTETRIVAGTMGRAARAIGGAALPLLDTF
GRDLDVLFKD

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 43784; Mature: 43784

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRSPLKDDSGPVHASHGRGTNQTGVRLYNERLILSLIRRHGRLTKVDIARLTGLSLQTT
CCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCHHHH
TVVMNRLEADGLLLAGERQRGRIGQPAVPYSLNPDGAYGLGMVVGRRACELVLMDFVAGV
HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RRRERLTYPYPLPDQLIAFAGRTLPDLIATLSPAAQARICGTGIATPFELWNWEEVLEAP
HHHHCCCCCCCCHHHHHHHHCCHHHHHHHHCCCHHHHEECCCCCCCCHHHCCHHHHHHCC
KDALAGWHDFDLGAELSRIAPGPVRVINDATAACAAELTFGGGSAYRDFAYFYIATFIGG
HHHHCCCCCCCCCCHHHHCCCCCEEEECCHHHHHHHEEEECCCCHHHHHHHHHHHHHHCC
GIVLNGSLFPGRSGNAGAFGSMPVVARGPGGGAGVQQLIRSASLYRLERQLGAIGIAGSQ
CEEEECCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
LWEQPDDWSRFSAPVDAWIEEAAEGLAQAIASCLAVVDFEAMVIDGAFPAPVRDKLVKRT
HHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHH
AAAFARLDRQGLTETRIVAGTMGRAARAIGGAALPLLDTFGRDLDVLFKD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure
MQRSPLKDDSGPVHASHGRGTNQTGVRLYNERLILSLIRRHGRLTKVDIARLTGLSLQTT
CCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCHHHH
TVVMNRLEADGLLLAGERQRGRIGQPAVPYSLNPDGAYGLGMVVGRRACELVLMDFVAGV
HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RRRERLTYPYPLPDQLIAFAGRTLPDLIATLSPAAQARICGTGIATPFELWNWEEVLEAP
HHHHCCCCCCCCHHHHHHHHCCHHHHHHHHCCCHHHHEECCCCCCCCHHHCCHHHHHHCC
KDALAGWHDFDLGAELSRIAPGPVRVINDATAACAAELTFGGGSAYRDFAYFYIATFIGG
HHHHCCCCCCCCCCHHHHCCCCCEEEECCHHHHHHHEEEECCCCHHHHHHHHHHHHHHCC
GIVLNGSLFPGRSGNAGAFGSMPVVARGPGGGAGVQQLIRSASLYRLERQLGAIGIAGSQ
CEEEECCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
LWEQPDDWSRFSAPVDAWIEEAAEGLAQAIASCLAVVDFEAMVIDGAFPAPVRDKLVKRT
HHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHH
AAAFARLDRQGLTETRIVAGTMGRAARAIGGAALPLLDTFGRDLDVLFKD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]