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The map label for this gene is radA [H]

Identifier: 154246343

GI number: 154246343

Start: 2680215

End: 2681684

Strand: Reverse

Name: radA [H]

Synonym: Xaut_2402

Alternate gene names: 154246343

Gene position: 2681684-2680215 (Counterclockwise)

Preceding gene: 154246344

Following gene: 154246342

Centisome position: 50.51

GC content: 72.11

Gene sequence:

>1470_bases
ATGGCCAAGCGCGACACGTCCTTCATCTGCCAGTCCTGCGGCGCGTCCTATACCCGCTGGCAGGGCAAGTGCGAGGCGTG
CGGCGCCTGGAACACCCTTGCCGAGGAAGTCGCCGTCGTCGCCAGCGTGCCCGCCGCCCAGCGCTCCGGCCGCAAGGGCC
GCTCAGTGGTGCTGGAAACCCTGCAGGGCACCGCCACGCCCGCCCCCCGCATGGTCTGCGGCATCGGCGAGCTGGACCGG
GTGGCGGGCGGCGGCTTCGTGCCCGGCTCGGTGCTCCTCATCGGCGGCGATCCCGGTATCGGCAAGTCCACCCTGCTGGT
GCAGGCCTCGGCGGCGCTGGCGGCGAACGGCCAGCGGGTGATCTATGTGTCCGGCGAGGAGGCGGTGGACCAGGTGCGCA
TGCGCGCCCAGCGCCTCGGTCTGGACCAGGCGCCGGTGAGCCTTGCCGCCGAGACCAATGCCGAGAACATCATCGCCACC
CTGTCCGGCGGCCCGCCTGTTCACATGGTCGTGATCGATTCCATCCAGACCATGTGGTCGGACAGCGTGGAATCCGCCCC
CGGCACGGTGACGCAGGTGCGCACCTCGGCCCAGTTGCTGGTGCGCTACGCCAAGCAGACCGGGGCGTGCGTGATCCTCG
TCGGCCACGTCACCAAGGACGGGCAGATCGCCGGGCCGCGGGTGGTGGAGCACATGGTGGACGCCGTCTTCTCCTTCGAG
GGCGACGGCGGTCACCAGTTCCGCATCCTGCGGGCCCAGAAGAACCGCTTCGGCCCCACCGACGAGATCGGCGTGTTCGA
GATGACCGGGCGCGGCCTGTCCGAGGTGGCCAATCCCTCCGAGCTGTTCCTCTCCAACCGCGATGCCGGCGCGCCGGGCA
CCGCCGTGTTCGCCGGCATGGAGGGCACGCGACCGGTGCTGGTGGAGATCCAGGCGCTGGTGGCGCCCTCCTCGCTCGGC
ACCCCGCGCCGCGCCGTGGTGGGCTGGGACCCCAACCGCCTCTCCATGGTGCTGGCGGTGCTGGATGCGCGCTGCGGCGT
GCGGCTCGGCGGGCATGATGTCTATCTGAACGTGGCCGGGGGCCTGAGGATCGGCGAGCCGGCGGCCGACCTTGCCGTTG
CGGCAGCCTTGGTCTCCTCCCTCACCGGCGCGCCTTTGCCGGCGGATGCGGTCTATTTCGGCGAGGCGAGCCTCACCGGC
GCGGTGCGGCAGGTGGCGCAAGCGGCGGCGCGGCTGAAGGAAGCGGCGAAGCTGGGATTTGCACGCGCCGTGCTGCCCTC
AGGCGGTCTCGACGGGGTGGACGCGCAAGTCTCGCTGCAGCCGGTGGGCTCGCTGGCGGAACTGGTGGCGGCCATCGCGG
CCTGCGCCCCTCGCCGGCCTGCCATGCGCGATTCGCGGGGCGGCGGCGAGCGGGACAAAAGGCCCCGGGCCGTCGAGCAC
GCGGAATGGGCGGACGACGAGGCCGGATAG

Upstream 100 bases:

>100_bases
GGCCATCTGGACCATATGTTCCTATTTTGTGCTCTAATGGACGAGCGCAGGGAGATTCGCTCCGCAATCTGATCGGTGCG
TGCTCTAGCGGAACAGGATC

Downstream 100 bases:

>100_bases
GCCAAGCTGTAACGCAGGAAGGTGACGCGGGCCGGCGCGCAAGCTATATCAGCCGCGCGGCGGGCTTCCCCCAGGCAACA
CCTGGACGGCATGCCGCGCG

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MAKRDTSFICQSCGASYTRWQGKCEACGAWNTLAEEVAVVASVPAAQRSGRKGRSVVLETLQGTATPAPRMVCGIGELDR
VAGGGFVPGSVLLIGGDPGIGKSTLLVQASAALAANGQRVIYVSGEEAVDQVRMRAQRLGLDQAPVSLAAETNAENIIAT
LSGGPPVHMVVIDSIQTMWSDSVESAPGTVTQVRTSAQLLVRYAKQTGACVILVGHVTKDGQIAGPRVVEHMVDAVFSFE
GDGGHQFRILRAQKNRFGPTDEIGVFEMTGRGLSEVANPSELFLSNRDAGAPGTAVFAGMEGTRPVLVEIQALVAPSSLG
TPRRAVVGWDPNRLSMVLAVLDARCGVRLGGHDVYLNVAGGLRIGEPAADLAVAAALVSSLTGAPLPADAVYFGEASLTG
AVRQVAQAAARLKEAAKLGFARAVLPSGGLDGVDAQVSLQPVGSLAELVAAIAACAPRRPAMRDSRGGGERDKRPRAVEH
AEWADDEAG

Sequences:

>Translated_489_residues
MAKRDTSFICQSCGASYTRWQGKCEACGAWNTLAEEVAVVASVPAAQRSGRKGRSVVLETLQGTATPAPRMVCGIGELDR
VAGGGFVPGSVLLIGGDPGIGKSTLLVQASAALAANGQRVIYVSGEEAVDQVRMRAQRLGLDQAPVSLAAETNAENIIAT
LSGGPPVHMVVIDSIQTMWSDSVESAPGTVTQVRTSAQLLVRYAKQTGACVILVGHVTKDGQIAGPRVVEHMVDAVFSFE
GDGGHQFRILRAQKNRFGPTDEIGVFEMTGRGLSEVANPSELFLSNRDAGAPGTAVFAGMEGTRPVLVEIQALVAPSSLG
TPRRAVVGWDPNRLSMVLAVLDARCGVRLGGHDVYLNVAGGLRIGEPAADLAVAAALVSSLTGAPLPADAVYFGEASLTG
AVRQVAQAAARLKEAAKLGFARAVLPSGGLDGVDAQVSLQPVGSLAELVAAIAACAPRRPAMRDSRGGGERDKRPRAVEH
AEWADDEAG
>Mature_488_residues
AKRDTSFICQSCGASYTRWQGKCEACGAWNTLAEEVAVVASVPAAQRSGRKGRSVVLETLQGTATPAPRMVCGIGELDRV
AGGGFVPGSVLLIGGDPGIGKSTLLVQASAALAANGQRVIYVSGEEAVDQVRMRAQRLGLDQAPVSLAAETNAENIIATL
SGGPPVHMVVIDSIQTMWSDSVESAPGTVTQVRTSAQLLVRYAKQTGACVILVGHVTKDGQIAGPRVVEHMVDAVFSFEG
DGGHQFRILRAQKNRFGPTDEIGVFEMTGRGLSEVANPSELFLSNRDAGAPGTAVFAGMEGTRPVLVEIQALVAPSSLGT
PRRAVVGWDPNRLSMVLAVLDARCGVRLGGHDVYLNVAGGLRIGEPAADLAVAAALVSSLTGAPLPADAVYFGEASLTGA
VRQVAQAAARLKEAAKLGFARAVLPSGGLDGVDAQVSLQPVGSLAELVAAIAACAPRRPAMRDSRGGGERDKRPRAVEHA
EWADDEAG

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=431, Percent_Identity=47.0997679814385, Blast_Score=389, Evalue=1e-109,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR020588
- InterPro:   IPR004504
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 50566; Mature: 50435

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRDTSFICQSCGASYTRWQGKCEACGAWNTLAEEVAVVASVPAAQRSGRKGRSVVLET
CCCCHHHHHHHHCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHH
LQGTATPAPRMVCGIGELDRVAGGGFVPGSVLLIGGDPGIGKSTLLVQASAALAANGQRV
HHCCCCCCCCEEECCCCHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEECHHHHCCCCEE
IYVSGEEAVDQVRMRAQRLGLDQAPVSLAAETNAENIIATLSGGPPVHMVVIDSIQTMWS
EEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEEHHHHHHHC
DSVESAPGTVTQVRTSAQLLVRYAKQTGACVILVGHVTKDGQIAGPRVVEHMVDAVFSFE
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCC
GDGGHQFRILRAQKNRFGPTDEIGVFEMTGRGLSEVANPSELFLSNRDAGAPGTAVFAGM
CCCCCEEEEEEECCCCCCCCCCCCEEEECCCCHHHHCCCHHHEECCCCCCCCCCEEEECC
EGTRPVLVEIQALVAPSSLGTPRRAVVGWDPNRLSMVLAVLDARCGVRLGGHDVYLNVAG
CCCCCEEEEEEEHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEECCCEEEEEEEC
GLRIGEPAADLAVAAALVSSLTGAPLPADAVYFGEASLTGAVRQVAQAAARLKEAAKLGF
CCEECCCHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
ARAVLPSGGLDGVDAQVSLQPVGSLAELVAAIAACAPRRPAMRDSRGGGERDKRPRAVEH
HHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
AEWADDEAG
CCCCCCCCC
>Mature Secondary Structure 
AKRDTSFICQSCGASYTRWQGKCEACGAWNTLAEEVAVVASVPAAQRSGRKGRSVVLET
CCCHHHHHHHHCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHH
LQGTATPAPRMVCGIGELDRVAGGGFVPGSVLLIGGDPGIGKSTLLVQASAALAANGQRV
HHCCCCCCCCEEECCCCHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEECHHHHCCCCEE
IYVSGEEAVDQVRMRAQRLGLDQAPVSLAAETNAENIIATLSGGPPVHMVVIDSIQTMWS
EEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEEHHHHHHHC
DSVESAPGTVTQVRTSAQLLVRYAKQTGACVILVGHVTKDGQIAGPRVVEHMVDAVFSFE
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCC
GDGGHQFRILRAQKNRFGPTDEIGVFEMTGRGLSEVANPSELFLSNRDAGAPGTAVFAGM
CCCCCEEEEEEECCCCCCCCCCCCEEEECCCCHHHHCCCHHHEECCCCCCCCCCEEEECC
EGTRPVLVEIQALVAPSSLGTPRRAVVGWDPNRLSMVLAVLDARCGVRLGGHDVYLNVAG
CCCCCEEEEEEEHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEECCCEEEEEEEC
GLRIGEPAADLAVAAALVSSLTGAPLPADAVYFGEASLTGAVRQVAQAAARLKEAAKLGF
CCEECCCHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
ARAVLPSGGLDGVDAQVSLQPVGSLAELVAAIAACAPRRPAMRDSRGGGERDKRPRAVEH
HHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
AEWADDEAG
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA